Biochemistry and Molecular Biology

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2013

Trefoil factor 3 peptide regulates migration via a Twist-dependent pathway in gastric cell

Zheng, Q., Gao, J., Li, H., Guo, W., Mao, Q., Gao, E. & Zhu, Y. Q., Aug 16 2013, In : Biochemical and Biophysical Research Communications. 438, 1, p. 6-12 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Un trio de choc pour pallier la chimiorésistance des cancers c-MYC, PARP1, BIN1

Translated title of the contribution: C-MYC, PARP1 and BIN1 as targets for therapy of cancer cell resistancePyndiah, S. & Sakamuro, D., Feb 1 2013, In : Medecine/Sciences. 29, 2, p. 133-135 3 p.

Research output: Contribution to journalArticle

5 Scopus citations
2012

[Biological effects of sCD40L on acute myeloid leukemia cells HL-60 and its mechanism].

Li, J., Chen, Q. & Ren, M., Apr 1 2012, In : Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi. 33, 4, p. 324-326 3 p.

Research output: Contribution to journalArticle

Acute progression of BCR-FGFR1 induced murine B-lympho/myeloproliferative disorder suggests involvement of lineages at the pro-B cell stage

Ren, M. Q., Tidwell, J. A., Sharma, S. & Cowell, J. K., Jun 6 2012, In : PloS one. 7, 6, e38265.

Research output: Contribution to journalArticle

18 Scopus citations

Article watch, July 2011

Slaughter, C., Jul 1 2012, In : Journal of Biomolecular Techniques. 22, 2, p. 86-89 4 p.

Research output: Contribution to journalArticle

AU-rich-element-dependent translation repression requires the cooperation of tristetraprolin and RCK/P54

Qi, M. Y., Wang, Z. Z., Zhang, Z., Shao, Q., Zeng, A., Li, X. Q., Li, W. Q., Wang, C., Tian, F. J., Li, Q., Zou, J., Qin, Y. W., Brewer, G., Huang, S. & Jing, Q., Mar 1 2012, In : Molecular and Cellular Biology. 32, 5, p. 913-928 16 p.

Research output: Contribution to journalArticle

58 Scopus citations

Bioimaging using the optimized nonlinear optical properties of ZnO nanoparticles

Urban, B. E., Neogi, P., Senthilkumar, K., Rajpurohit, S. K., Jagadeeshwaran, P., Kim, S., Fujita, Y. & Neogi, A., 2012, In : Selected Topics in Quantum Electronics, IEEE Journal of. 18, 4, p. 1451-1456 6 p.

Research output: Contribution to journalArticle

15 Scopus citations
136 Scopus citations

Chemokine and chemokine receptor expression in kidney tumors: Molecular profiling of histological subtypes and association with metastasis

Gahan, J. C., Gosalbez, M., Yates, T., Young, E. E., Escudero, D. O., Chi, A., Garcia-Roig, M., Satyanarayana, R., Soloway, M. S., Bird, V. G. & Lokeshwar, V. B., Mar 1 2012, In : Journal of Urology. 187, 3, p. 827-833 7 p.

Research output: Contribution to journalArticle

28 Scopus citations

Cyclin E1 is a common target of BMI1 and MYCN and a prognostic marker for neuroblastoma progression

Mao, L., Ding, J., Perdue, A., Yang, L., Zha, Y., Ren, M., Huang, S., Cui, H. & Ding, H. F., Aug 16 2012, In : Oncogene. 31, 33, p. 3785-3795 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Decitabine and vorinostat cooperate to sensitize colon carcinoma cells to fas ligand-induced apoptosis in vitro and tumor suppression in vivo

Yang, D., Torres, C. M., Bardhan, K., Zimmerman, M., McGaha, T. L. & Liu, K., May 1 2012, In : Journal of Immunology. 188, 9, p. 4441-4449 9 p.

Research output: Contribution to journalArticle

58 Scopus citations

De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system

Peterson, M. P., Whittaker, D. J., Ambreth, S., Sureshchandra, S., Buechlein, A., Podicheti, R., Choi, J. H., Lai, Z., Mockatis, K., Colbourne, J., Tang, H. & Ketterson, E. D., Jul 9 2012, In : BMC Genomics. 13, 1, 305.

Research output: Contribution to journalArticle

27 Scopus citations

Development of a novel animal model to differentiate radiation necrosis from tumor recurrence

Kumar, S., Arbab, A. S., Jain, R., Kim, J., DeCarvalho, A. C., Shankar, A., Mikkelsen, T. & Brown, S. L., Jul 2012, In : Journal of Neuro-Oncology. 108, 3, p. 411-420 10 p.

Research output: Contribution to journalArticle

19 Scopus citations

Disease outcomes are influenced by the Yang (M1) or Yin (M2) of macrophage function

Rosenthal, K. S., Drakovac, S. & Stone, S., Jul 1 2012, In : Infectious Diseases in Clinical Practice. 20, 4, p. 272-276 5 p.

Research output: Contribution to journalArticle

ESTclean: A cleaning tool for next-gen transcriptome shotgun sequencing

Tae, H., Ryu, D., Sureshchandra, S. & Choi, J-H., Sep 26 2012, In : BMC Bioinformatics. 13, 1, 247.

Research output: Contribution to journalArticle

5 Scopus citations

Functional dissection of HOXD cluster genes in regulation of neuroblastoma cell proliferation and differentiation

Zha, Y., Ding, E., Yang, L., Mao, L., Wang, X., McCarthy, B. A., Huang, S. & Ding, H., Aug 7 2012, In : PloS one. 7, 8, e40728.

Research output: Contribution to journalArticle

23 Scopus citations

Geneclusterviz: A tool for conserved gene cluster visualization, exploration and analysis

Pejaver, V. R., An, J., Rhee, S. M., Bhan, A., Choi, J. H., Liu, B., Lee, H., Brown, P. J., Kysela, D., Brun, Y. V. & Kim, S., Jun 1 2012, In : Bioinformatics. 28, 11, p. 1527-1529 3 p., bts177.

Research output: Contribution to journalArticle

4 Scopus citations

Genistein suppresses prostate cancer growth through inhibition of oncogenic MicroRNA-151

Chiyomaru, T., Yamamura, S., Zaman, M. S., Majid, S., Deng, G., Shahryari, V., Saini, S., Hirata, H., Ueno, K., Chang, I., Tanaka, Y., Tabatabai, Z. L., Enokida, H., Nakagawa, M. & Dahiya, R., Aug 23 2012, In : PloS one. 7, 8, e43812.

Research output: Contribution to journalArticle

Open Access
76 Scopus citations

Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia

Pei, L., Choi, J-H., Liu, J., Lee, E. J., McCarthy, B., Wilson, J. M., Speir, E., Awan, F., Tae, H., Arthur, G., Schnabel, J. L., Taylor, K. H., Wang, X., Xu, D., Ding, H., Munn, D. H., Caldwell, C. W. & Shi, H., Jun 2012, In : Epigenetics. 7, 6, p. 567-578 12 p.

Research output: Contribution to journalArticle

62 Scopus citations

Gr-1+CD11b+ cells are responsible for tumor promoting effect of TGF-β in breast cancer progression

Li, Z., Pang, Y., Gara, S. K., Achyut, B. R., Heger, C., Goldsmith, P. K., Lonning, S. & Yang, L., Dec 1 2012, In : International Journal of Cancer. 131, 11, p. 2584-95 12 p.

Research output: Contribution to journalArticle

32 Scopus citations

High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation

Wu, A. R., Kawahara, T. L. A., Rapicavoli, N. A., Riggelen, J. V., Shroff, E. H., Xu, L., Felsher, D. W., Chang, H. Y. & Quake, S. R., Jun 21 2012, In : Lab on a Chip. 12, 12, p. 2190-2198 9 p.

Research output: Contribution to journalArticle

43 Scopus citations

Identification and characterization of solvent-filled channels in human ferrochelatase

Medlock, A. E., Najahi-Missaoui, W., Ross, T. A., Dailey, T. A., Burch, J., O'Brien, J. R., Lanzilotta, W. N. & Dailey, H. A., Jul 10 2012, In : Biochemistry. 51, 27, p. 5422-5433 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Increased telomerase activity and vitamin D supplementation in overweight African Americans

Zhu, H., Guo, D., Li, K., Pedersen-White, J., Stallmann-Jorgensen, I. S., Huang, Y., Parikh, S., Liu, K. & Dong, Y., Jun 1 2012, In : International Journal of Obesity. 36, 6, p. 805-809 5 p.

Research output: Contribution to journalArticle

33 Scopus citations

Insulin-like growth factor 1 attenuates antiestrogen- and antiprogestin-induced apoptosis in ER + breast cancer cells by MEK1 regulation of the BH3-only pro-apoptotic protein Bim

Periyasamy-Thandavan, S., Takhar, S., Singer, A., Dohn, M. R., Jackson, W. H., Welborn, A. E., LeRoith, D., Marrero, M., Thangaraju, M., Huang, S. & Schoenlein, P. V., Mar 19 2012, In : Breast Cancer Research. 14, 2, R52.

Research output: Contribution to journalArticle

15 Scopus citations

Iron-mediated retinal degeneration in haemojuvelin-knockout mice

Gnana-Prakasam, J. P., Tawfik, A., Romej, M., Ananth, S., Martin, P. M., Smith, S. B. & Ganapathy, V., Jan 15 2012, In : Biochemical Journal. 441, 2, p. 599-608 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

Lin28 regulates HER2 and promotes malignancy through multiple mechanisms

Feng, C., Neumeister, V., Ma, W., Xu, J., Lu, L., Bordeaux, J., Maihle, N. J., Rimm, D. L. & Huang, Y., Jul 1 2012, In : Cell Cycle. 11, 13, p. 2486-2494 9 p.

Research output: Contribution to journalArticle

50 Scopus citations

Linking DNA Methyltransferases to Epigenetic Marks and Nucleosome Structure Genome-wide in Human Tumor Cells

Jin, B., Ernst, J., Tiedemann, R. L., Xu, H., Sureshchandra, S., Kellis, M., Dalton, S., Liu, C., Choi, J. H. & Robertson, K. D., Nov 29 2012, In : Cell Reports. 2, 5, p. 1411-1424 14 p.

Research output: Contribution to journalArticle

80 Scopus citations

Loss of thioredoxin function in retinas of mice overexpressing amyloid β

Powell, F. L., Ripandelli, G., Webster, S., Montemari, A., Maraschi, A., Martin, P. M., Marcus, D. M., Liou, G. I. & Bartoli, M., Aug 1 2012, In : Free Radical Biology and Medicine. 53, 3, p. 577-588 12 p.

Research output: Contribution to journalArticle

11 Scopus citations

MicroRNA-1280 Inhibits Invasion and Metastasis by Targeting ROCK1 in Bladder Cancer

Majid, S., Dar, A. A., Saini, S., Shahryari, V., Arora, S., Zaman, M. S., Chang, I., Yamamura, S., Chiyomaru, T., Fukuhara, S., Tanaka, Y., Deng, G., Tabatabai, Z. L. & Dahiya, R., Oct 4 2012, In : PloS one. 7, 10, e46743.

Research output: Contribution to journalArticle

Open Access
45 Scopus citations

Microrna-34a modulates c-Myc transcriptional complexes to suppress malignancy in human prostate cancer cells

Yamamura, S., Saini, S., Majid, S., Hirata, H., Ueno, K., Deng, G. & Dahiya, R., Jan 3 2012, In : PloS one. 7, 1, e29722.

Research output: Contribution to journalArticle

Open Access
95 Scopus citations

Mitochondrial Atpif1 regulates haem synthesis in developing erythroblasts

Shah, D. I., Takahashi-Makise, N., Cooney, J. D., Li, L., Schultz, I. J., Pierce, E. L., Narla, A., Seguin, A., Hattangadi, S. M., Medlock, A. E., Langer, N. B., Dailey, T. A., Hurst, S. N., Faccenda, D., Wiwczar, J. M., Heggers, S. K., Vogin, G., Chen, W., Chen, C., Campagna, D. R. & 10 others, Brugnara, C., Zhou, Y., Ebert, B. L., Danial, N. N., Fleming, M. D., Ward, D. M., Campanella, M., Dailey, H. A., Kaplan, J. & Paw, B. H., Nov 22 2012, In : Nature. 491, 7425, p. 608-612 5 p.

Research output: Contribution to journalArticle

42 Scopus citations

Multimeric structures of HLA-G isoforms function through differential binding to LILRB receptors

HoWangYin, K. Y., Loustau, M., Wu, J., Alegre, E., Daouya, M., Caumartin, J., Sousa, S., Horuzsko, A., Carosella, E. D. & LeMaoult, J., Dec 1 2012, In : Cellular and Molecular Life Sciences. 69, 23, p. 4041-4049 9 p.

Research output: Contribution to journalArticle

36 Scopus citations

NF-Y Recruits Both Transcription Activator and Repressor to Modulate Tissue- and Developmental Stage-Specific Expression of Human γ-Globin Gene

Zhu, X., Wang, Y., Pi, W., Liu, H., Wickrema, A. & Tuan Lo, D., Oct 10 2012, In : PloS one. 7, 10, e47175.

Research output: Contribution to journalArticle

22 Scopus citations

NF-κB2 mutation targets survival, proliferation and differentiation pathways in the pathogenesis of plasma cell tumors

McCarthy, B. A., Yang, L., Ding, J., Ren, M., King, W., Elsalanty, M. E., Zakhary, I., Sharawy, M. M. H., Cui, H. & Ding, H., May 29 2012, In : BMC Cancer. 12, 203.

Research output: Contribution to journalArticle

2 Scopus citations

NF-κB directly regulates fas transcription to modulate Fas-mediated apoptosis and tumor suppression

Liu, F., Bardhan, K., Yang, D., Thangaraju, M., Ganapathy, V., Waller, J. L., Liles, G. B., Lee, J. R. & Liu, K., Jul 20 2012, In : Journal of Biological Chemistry. 287, 30, p. 25530-25540 11 p.

Research output: Contribution to journalArticle

84 Scopus citations

PDGF upregulates Mcl-1 through activation of β-catenin and HIF-1α-dependent signaling in human prostate cancer cells

Iqbal, S., Zhang, S., Driss, A., Liu, Z. R., Kim, H. R. C., Wang, Y., Ritenour, C., Zhau, H. E., Kucuk, O., Chung, L. W. K. & Wu, D., Jan 20 2012, In : PloS one. 7, 1, e30764.

Research output: Contribution to journalArticle

39 Scopus citations

Polyfunctional CD4+ T cells are essential for eradicating advanced B-cell lymphoma after chemotherapy

Ding, Z. C., Huang, L., Blazar, B. R., Yagita, H., Mellor, A. L., Munn, D. H. & Zhou, G., Sep 13 2012, In : Blood. 120, 11, p. 2229-2239 11 p.

Research output: Contribution to journalArticle

42 Scopus citations

Regulation of myosin activation during cell-cell contact formation by Par3-Lgl antagonism: Entosis without matrix detachment

Wan, Q., Liu, J., Zheng, Z., Zhu, H., Chu, X., Dong, Z., Huang, S. & Du, Q., Jun 1 2012, In : Molecular Biology of the Cell. 23, 11, p. 2076-2091 16 p.

Research output: Contribution to journalArticle

34 Scopus citations

Regulation of proton-coupled folate transporter in retinal Müller cells by the antipsoriatic drug monomethylfumarate

Bozard, B. R., Chothe, P. P., Tawfik, A., Williams, C., Fulzele, S., Prasad, P. D., Martin, P. M., Ganapathy, V. & Smith, S. B., Mar 1 2012, In : Glia. 60, 3, p. 333-342 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

Serum levels of microRNAs can specifically predict liver injury of chronic hepatitis B

Zhang, H., Li, Q. Y., Guo, Z. Z., Guan, Y., Du, J., Lu, Y. Y., Hu, Y. Y., Liu, P., Huang, S. & Su, S. B., Oct 29 2012, In : World Journal of Gastroenterology. 18, 37, p. 5188-5196 9 p.

Research output: Contribution to journalArticle

51 Scopus citations

Silencer-delimited transgenesis: NRSE/RE1 sequences promote neural-specific transgene expression in a NRSF/REST-dependent manner.

Xie, X., Mathias, J. R., Smith, M. A., Walker, S. L., Teng, Y., Distel, M., Köster, R. W., Sirotkin, H. I., Saxena, M. T. & Mumm, J. S., Nov 30 2012, In : BMC Biology. 10, 93.

Research output: Contribution to journalArticle

13 Scopus citations

The effect of the length and flexibility of the side chain of basic amino acids on the binding of antimicrobial peptides to zwitterionic and anionic membrane model systems

Russell, A. L., Williams, B. C., Spuches, A., Klapper, D., Srouji, A. H. & Hicks, R. P., Mar 1 2012, In : Bioorganic and Medicinal Chemistry. 20, 5, p. 1723-1739 17 p.

Research output: Contribution to journalArticle

14 Scopus citations

The proinflammatory myeloid cell receptor TREM-1 controls Kupffer cell activation and development of hepatocellular carcinoma

Wu, J., Li, J., Salcedo, R., Mivechi, N. F., Trinchieri, G. & Horuzsko, A., Aug 15 2012, In : Cancer Research. 72, 16, p. 3977-3986 10 p.

Research output: Contribution to journalArticle

114 Scopus citations

The stress response mediator ATF3 represses androgen signaling by binding the androgen receptor

Wang, H., Jiang, M., Cui, H., Chen, M., Buttyan, R., Hayward, S. W., Hai, T., Wang, Z. & Yan, C., Aug 1 2012, In : Molecular and Cellular Biology. 32, 16, p. 3190-3202 13 p.

Research output: Contribution to journalArticle

26 Scopus citations

Tracking of In-111-labeled human umbilical tissue-derived cells (hUTC) in a rat model of cerebral ischemia using SPECT imaging

Arbab, A. S., Thiffault, C., Navia, B., Victor, S. J., Hong, K., Zhang, L., Jiang, Q., Varma, N. R. S., Iskander, A. S. M. & Chopp, M., Dec 6 2012, In : BMC Medical Imaging. 12, 33.

Research output: Contribution to journalArticle

20 Scopus citations

Transcriptional Regulation of the Ufm1 Conjugation System in Response to Disturbance of the Endoplasmic Reticulum Homeostasis and Inhibition of Vesicle Trafficking

Zhang, Y., Zhang, M., Wu, J., Lei, G. & Li, H., Nov 13 2012, In : PloS one. 7, 11, e48587.

Research output: Contribution to journalArticle

53 Scopus citations

Transport of the synthetic opioid peptide DADLE ([d-Ala2,d-Leu5]-Enkephalin) in neuronal cells

Ananth, S., Thakkar, S. V., Gnana-prakasam, J. P., Martin, P. M., Ganapathy, P. S., Smith, S. B. & Ganapathy, V., Jan 2012, In : Journal of Pharmaceutical Sciences. 101, 1, p. 154-163 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

Type 2 cGMP-dependent protein Kinase regulates proliferation and differentiation in the colonic mucosa

Wang, R., Kwon, I. K., Thangaraju, M., Singh, N., Liu, K., Jay, P., Hofmann, F., Ganapathy, V. & Browning, D. D., Jul 15 2012, In : American Journal of Physiology - Gastrointestinal and Liver Physiology. 303, 2, p. G209-G219

Research output: Contribution to journalArticle

25 Scopus citations

Up-regulation of microRNA-21 correlates with lower kidney cancer survival

Zaman, M. S., Shahryari, V., Deng, G., Thamminana, S., Saini, S., Majid, S., Chang, I., Hirata, H., Ueno, K., Yamamura, S., Singh, K., Tanaka, Y., Tabatabai, Z. L. & Dahiya, R., Feb 8 2012, In : PloS one. 7, 2, e31060.

Research output: Contribution to journalArticle

Open Access
109 Scopus citations
2011

A20-binding inhibitor of NF-κB (ABIN1) controls Toll-like receptor-mediated CCAAT/enhancer-binding protein β activation and protects from inflammatory disease

Zhou, J., Wu, R., High, A. A., Slaughter, C. A., Finkelstein, D., Rehg, J. E., Redecke, V. & Häcker, H., Nov 1 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 44, p. E998-E1006

Research output: Contribution to journalArticle

65 Scopus citations