Center for Biotechnology and Genomic Medicine

Research Output 2010 2017

2017
2 Citations (Scopus)

Anti-GITR Antibody Treatment Increases TCR Repertoire Diversity of Regulatory but not Effector T Cells Engaged in the Immune Response Against B16 Melanoma

Scirka, B., Szurek, E., Pietrzak, M., Rempala, G., Kisielow, P., Ignatowicz, L. & Miazek, A., Dec 1 2017, In : Archivum Immunologiae et Therapiae Experimentalis. 65, 6, p. 553-564 12 p.

Research output: Contribution to journalArticle

Experimental Melanomas
T-Cell Antigen Receptor
Glucocorticoids
T-Lymphocytes
Antibodies
2016
403 Citations (Scopus)

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

Linehan, W. M., Spellman, P. T., Ricketts, C. J., Creighton, C. J., Fei, S. S., Davis, C., Wheeler, D. A., Murray, B. A., Schmidt, L., Vocke, C. D., Peto, M., Al Mamun, A. A. M., Shinbrot, E., Sethi, A., Brooks, S., Rathmell, W. K., Brooks, A. N., Hoadley, K. A., Robertson, A. G., Brooks, D. & 208 others, Bowlby, R., Sadeghi, S., Shen, H., Weisenberger, D. J., Bootwalla, M., Baylin, S. B., Laird, P. W., Cherniack, A. D., Saksena, G., Haake, S., Li, J., Liang, H., Lu, Y., Mills, G. B., Akbani, R., Leiserson, M. D. M., Raphael, B. J., Anur, P., Bottaro, D., Albiges, L., Barnabas, N., Choueiri, T. K., Czerniak, B., Godwin, A. K., Hakimi, A. A., Ho, T. H., Hsieh, J., Ittmann, M., Kim, W. Y., Krishnan, B., Merino, M. J., Shaw, K. R. M., Reuter, V. E., Reznik, E., Shelley, C. S., Shuch, B., Signoretti, S., Srinivasan, R., Tamboli, P., Thomas, G., Tickoo, S., Burnett, K., Crain, D., Gardner, J., Lau, K., Mallery, D., Morris, S., Paulauskis, J. D., Penny, R. J., Shelton, C., Shelton, W. T., Sherman, M., Thompson, E., Yena, P., Avedon, M. T., Bowen, J., Gastier-Foster, J. M., Gerken, M., Leraas, K. M., Lichtenberg, T. M., Ramirez, N. C., Santos, T., Wise, L., Zmuda, E., Demchok, J. A., Felau, I., Hutter, C. M., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Zhang, J., Ayala, B., Baboud, J., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Ally, A., Balasundaram, M., Balu, S., Beroukhim, R., Bodenheimer, T., Buhay, C., Butterfield, Y. S. N., Carlsen, R., Carter, S. L., Chao, H., Chuah, E., Clarke, A., Covington, K. R., Dahdouli, M., Dewal, N., Dhalla, N., Doddapaneni, H. V., Drummond, J. A., Gabriel, S. B., Gibbs, R. A., Guin, R., Hale, W., Hawes, A., Hayes, D. N., Holt, R. A., Hoyle, A. P., Jefferys, S. R., Jones, S. J. M., Jones, C. D., Kalra, D., Kovar, C., Lewis, L., Li, J., Ma, Y., Marra, M. A., Mayo, M., Meng, S., Meyerson, M., Mieczkowski, P. A., Moore, R. A., Morton, D., Mose, L. E., Mungall, A. J., Muzny, D., Parker, J. S., Perou, C. M., Roach, J., Schein, J. E., Schumacher, S. E., Shi, Y., Simons, J. V., Sipahimalani, P., Skelly, T., Soloway, M. G., Sougnez, C., Tam, A., Tan, D., Thiessen, N., Veluvolu, U., Wang, M., Wilkerson, M. D., Wong, T., Wu, J., Xi, L., Zhou, J., Bedford, J., Chen, F., Fu, Y., Gerstein, M., Haussler, D., Kasaian, K., Lai, P., Ling, S., Radenbaugh, A., Van Den Berg, D., Weinstein, J. N., Zhu, J., Albert, M., Alexopoulou, I., Andersen, J. J., Auman, J. T., Bartlett, J., Bastacky, S., Bergsten, J., Blute, M. L., Boice, L., Bollag, R. J., Boyd, J., Castle, E., Chen, Y. B., Cheville, J. C., Curley, E., Davies, B., DeVolk, A., Dhir, R., Dike, L., Eckman, J., Engel, J., Harr, J., Hrebinko, R., Huang, M., Huelsenbeck-Dill, L., Iacocca, M., Jacobs, B., Lobis, M., Maranchie, J. K., McMeekin, S., Myers, J., Nelson, J., Parfitt, J., Parwani, A., Petrelli, N., Rabeno, B., Roy, S., Salner, A. L., Slaton, J., Stanton, M., Thompson, R. H., Thorne, L., Tucker, K., Weinberger, P. M., Winemiller, C., Zach, L. A. & Zuna, R., Jan 14 2016, In : New England Journal of Medicine. 374, 2, p. 135-145 11 p.

Research output: Contribution to journalArticle

Renal Cell Carcinoma
Antioxidant Response Elements
CpG Islands
Kidney Neoplasms
Phenotype
14 Citations (Scopus)

In vitro characterization of design and compressive properties of 3D-biofabricated/decellularized hybrid grafts for tracheal tissue engineering

Johnson, C., Sheshadri, P., Ketchum, J. M., Narayanan, L. K., Weinberger, P. M. & Shirwaiker, R. A., Jun 1 2016, In : Journal of the Mechanical Behavior of Biomedical Materials. 59, p. 572-585 14 p.

Research output: Contribution to journalArticle

Tissue engineering
Grafts
Scaffolds
Gamma rays
Environmental testing
8 Citations (Scopus)

Mechanical Modeling of the Human Cricoid Cartilage Using Computer-Aided Design: Applications in Airway Balloon Dilation Research

Johnson, C. M., Howell, J. T., Mettenburg, D. J., Rueggeberg, F., Howell, R. J., Postma, G. N. & Weinberger, P. M., Jan 2016, In : Annals of Otology, Rhinology and Laryngology. 125, 1, p. 69-76 8 p.

Research output: Contribution to journalArticle

Cricoid Cartilage
Computer-Aided Design
Dilatation
Research
Pathologic Constriction
1 Citation (Scopus)

Tiny Bubbles; Composite Cocktails for Medical Applications

Wicks, G. G., Hill, W. D. & Weinberger, P. M., Jan 1 2016, In : International Journal of Applied Glass Science. 7, 2, p. 164-172 9 p.

Research output: Contribution to journalArticle

Medical applications
Microspheres
Composite materials
Glass
Porosity
11 Citations (Scopus)

Transgelin increases metastatic potential of colorectal cancer cells in vivo and alters expression of genes involved in cell motility

Zhou, H. M., Fang, Y. Y., Weinberger, P. M., Ding, L. L., Cowell, J. K., Hudson, F. Z., Ren, M., Lee, J. R., Chen, Q. K., Su, H., Dynan, W. S. & Lin, Y., Feb 4 2016, In : BMC Cancer. 16, 1, 55.

Research output: Contribution to journalArticle

Cell Movement
Colorectal Neoplasms
Gene Expression
Neoplasm Metastasis
Tail
1 Citation (Scopus)

Why sinonasal disease spares the inferior turbinate: An immunohistochemical analysis

White, L. C., Weinberger, P. M., Coulson, H., Guo, D., Jang, D., Gurrola, J. & Kountakis, S. E., May 1 2016, In : Laryngoscope. 126, 5, p. E179-E183

Research output: Contribution to journalArticle

Turbinates
Vascular Cell Adhesion Molecule-1
Polyps
Toll-Like Receptor 2
Proteins
2015
9 Citations (Scopus)

Altered connexin 43 expression underlies age-dependent decrease of regulatory T cell suppressor function in nonobese diabetic mice

Kuczma, M., Wang, C. Y., Ignatowicz, L., Gourdie, R. & Kraj, P., Jun 1 2015, In : Journal of Immunology. 194, 11, p. 5261-5271 11 p.

Research output: Contribution to journalArticle

Connexin 43
Inbred NOD Mouse
Regulatory T-Lymphocytes
Gap Junctions
T-Lymphocytes
41 Citations (Scopus)

A novel temporal bone simulation model using 3D printing techniques

Mowry, S. E., Jammal, H., Myer, C., Solares, C. A. & Weinberger, P., Oct 1 2015, In : Otology and Neurotology. 36, 9, p. 1562-1565 4 p.

Research output: Contribution to journalArticle

Temporal Bone
Three Dimensional Printing
Plastics
Anatomy
Acrylonitrile
1268 Citations (Scopus)

Comprehensive genomic characterization of head and neck squamous cell carcinomas

The Cancer Genome Atlas Network, Jan 29 2015, In : Nature. 517, 7536, p. 576-582 7 p.

Research output: Contribution to journalArticle

Mutation
Neoplasms
TNF Receptor-Associated Factor 3
cdc Genes
Atlases
7 Citations (Scopus)

Delineation of gastric cancer subtypes by co-regulated expression of receptor tyrosine kinases and chemosensitivity genes

Li, S. C., Ma, R., Wu, J. Z., Xiao, X., Wu, W., Li, G., Chen, B., Sharma, A. K., Bai, S., Dun, B. Y., She, J-X. & Tang, J. H., Sep 11 2015, In : American Journal of Translational Research. 7, 8, p. 1429-1439 11 p.

Research output: Contribution to journalArticle

Receptor Protein-Tyrosine Kinases
Stomach Neoplasms
Genes
Chemotherapy
Platelet-Derived Growth Factor beta Receptor
52 Citations (Scopus)

Differences in expression level of Helios and neuropilin-1 do not distinguish thymus-derived from extrathymically-induced CD4+Foxp3+ regulatory T cells

Szurek, E., Cebula, A., Wojciech, L., Pietrzak, M., Rempala, G., Kisielow, P. & Ignatowicz, L., Oct 23 2015, In : PloS one. 10, 10, e0141161.

Research output: Contribution to journalArticle

Neuropilin-1
Semaphorins
Thymus
T-cells
Regulatory T-Lymphocytes
10 Citations (Scopus)

Tracheal Size Variability is Associated with Sex: Implications for Endotracheal Tube Selection

Karmakar, A., Pate, M. B., Solowski, N. L., Postma, G. N. & Weinberger, P. M., Feb 1 2015, In : Annals of Otology, Rhinology and Laryngology. 124, 2, p. 132-136 5 p.

Research output: Contribution to journalArticle

Nonparametric Statistics
Body Mass Index
Tomography
Weights and Measures
Nomograms
1 Citation (Scopus)

Tregs strip dendritic cells of CD70 to regulate Th1 differentiation

Wojciech, L. & Ignatowicz, L., May 12 2015, In : EMBO Journal. 34, 10, p. 1290-1292 3 p.

Research output: Contribution to journalArticle

T-cells
Dendritic Cells
T-Lymphocytes
Regulatory T-Lymphocytes
Immunosuppressive Agents
2013
2 Citations (Scopus)

Prenatal ultrasound exposure and association with postnatal hearing outcomes.

Harbarger, C. F., Weinberger, P. M., Borders, J. C. & Hughes, C. A., Jan 31 2013, In : Journal of otolaryngology - head & neck surgery = Le Journal d'oto-rhino-laryngologie et de chirurgie cervico-faciale. 42, 3, p. 1-5 5 p.

Research output: Contribution to journalArticle

Hearing
Hearing Loss
Newborn Infant
Third Pregnancy Trimester
Prenatal Diagnosis
2011
37 Citations (Scopus)

Discovery and validation of serum protein changes in type 1 diabetes patients using high throughput two dimensional liquid chromatography-mass spectrometry and immunoassays.

Zhi, W., Sharma, A., Purohit, S., Miller, E., Bode, B., Anderson, S. W., Reed, J. C., Steed, R. D., Steed, L., Hopkins, D. & She, J. X., Nov 1 2011, In : Molecular & cellular proteomics : MCP. 10, 11

Research output: Contribution to journalArticle

Liquid chromatography
Medical problems
Type 1 Diabetes Mellitus
Immunoassay
Liquid Chromatography
2010
7 Citations (Scopus)

Nuclear factor kappa-B and histopathology of chronic gastritis

Moorchung, N., Srivastava, A. N., Sharma, A. K., Achyut, B. R. & Mittal, B., Aug 12 2010, In : Indian Journal of Pathology and Microbiology. 53, 3, p. 418-21 4 p.

Research output: Contribution to journalArticle

NF-kappa B
Gastritis
Atrophy
Neutrophils
Inflammation