Center for Biotechnology and Genomic Medicine

Research Output

2019

Dormant pathogenic CD4+ T cells are prevalent in the peripheral repertoire of healthy mice

Cebula, A., Kuczma, M., Szurek, E., Pietrzak, M., Savage, N., Elhefnawy, W. R., Rempala, G., Kraj, P. & Ignatowicz, L., Dec 1 2019, In : Nature communications. 10, 1, 4882.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2018

The mechanisms shaping the repertoire of CD4+ Foxp3+ regulatory T cells

Kraj, P. & Ignatowicz, L., Mar 2018, In : Immunology. 153, 3, p. 290-296 7 p.

Research output: Contribution to journalReview article

10 Scopus citations
2017

Anti-GITR Antibody Treatment Increases TCR Repertoire Diversity of Regulatory but not Effector T Cells Engaged in the Immune Response Against B16 Melanoma

Scirka, B., Szurek, E., Pietrzak, M., Rempala, G., Kisielow, P., Ignatowicz, L. & Miazek, A., Dec 1 2017, In : Archivum Immunologiae et Therapiae Experimentalis. 65, 6, p. 553-564 12 p.

Research output: Contribution to journalArticle

3 Scopus citations
2016

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

Linehan, W. M., Spellman, P. T., Ricketts, C. J., Creighton, C. J., Fei, S. S., Davis, C., Wheeler, D. A., Murray, B. A., Schmidt, L., Vocke, C. D., Peto, M., Al Mamun, A. A. M., Shinbrot, E., Sethi, A., Brooks, S., Rathmell, W. K., Brooks, A. N., Hoadley, K. A., Robertson, A. G., Brooks, D. & 208 others, Bowlby, R., Sadeghi, S., Shen, H., Weisenberger, D. J., Bootwalla, M., Baylin, S. B., Laird, P. W., Cherniack, A. D., Saksena, G., Haake, S., Li, J., Liang, H., Lu, Y., Mills, G. B., Akbani, R., Leiserson, M. D. M., Raphael, B. J., Anur, P., Bottaro, D., Albiges, L., Barnabas, N., Choueiri, T. K., Czerniak, B., Godwin, A. K., Hakimi, A. A., Ho, T. H., Hsieh, J., Ittmann, M., Kim, W. Y., Krishnan, B., Merino, M. J., Shaw, K. R. M., Reuter, V. E., Reznik, E., Shelley, C. S., Shuch, B., Signoretti, S., Srinivasan, R., Tamboli, P., Thomas, G., Tickoo, S., Burnett, K., Crain, D., Gardner, J., Lau, K., Mallery, D., Morris, S., Paulauskis, J. D., Penny, R. J., Shelton, C., Shelton, W. T., Sherman, M., Thompson, E., Yena, P., Avedon, M. T., Bowen, J., Gastier-Foster, J. M., Gerken, M., Leraas, K. M., Lichtenberg, T. M., Ramirez, N. C., Santos, T., Wise, L., Zmuda, E., Demchok, J. A., Felau, I., Hutter, C. M., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Zhang, J., Ayala, B., Baboud, J., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Ally, A., Balasundaram, M., Balu, S., Beroukhim, R., Bodenheimer, T., Buhay, C., Butterfield, Y. S. N., Carlsen, R., Carter, S. L., Chao, H., Chuah, E., Clarke, A., Covington, K. R., Dahdouli, M., Dewal, N., Dhalla, N., Doddapaneni, H. V., Drummond, J. A., Gabriel, S. B., Gibbs, R. A., Guin, R., Hale, W., Hawes, A., Hayes, D. N., Holt, R. A., Hoyle, A. P., Jefferys, S. R., Jones, S. J. M., Jones, C. D., Kalra, D., Kovar, C., Lewis, L., Li, J., Ma, Y., Marra, M. A., Mayo, M., Meng, S., Meyerson, M., Mieczkowski, P. A., Moore, R. A., Morton, D., Mose, L. E., Mungall, A. J., Muzny, D., Parker, J. S., Perou, C. M., Roach, J., Schein, J. E., Schumacher, S. E., Shi, Y., Simons, J. V., Sipahimalani, P., Skelly, T., Soloway, M. G., Sougnez, C., Tam, A., Tan, D., Thiessen, N., Veluvolu, U., Wang, M., Wilkerson, M. D., Wong, T., Wu, J., Xi, L., Zhou, J., Bedford, J., Chen, F., Fu, Y., Gerstein, M., Haussler, D., Kasaian, K., Lai, P., Ling, S., Radenbaugh, A., Van Den Berg, D., Weinstein, J. N., Zhu, J., Albert, M., Alexopoulou, I., Andersen, J. J., Auman, J. T., Bartlett, J., Bastacky, S., Bergsten, J., Blute, M. L., Boice, L., Bollag, R. J., Boyd, J., Castle, E., Chen, Y. B., Cheville, J. C., Curley, E., Davies, B., DeVolk, A., Dhir, R., Dike, L., Eckman, J., Engel, J., Harr, J., Hrebinko, R., Huang, M., Huelsenbeck-Dill, L., Iacocca, M., Jacobs, B., Lobis, M., Maranchie, J. K., McMeekin, S., Myers, J., Nelson, J., Parfitt, J., Parwani, A., Petrelli, N., Rabeno, B., Roy, S., Salner, A. L., Slaton, J., Stanton, M., Thompson, R. H., Thorne, L., Tucker, K., Weinberger, P. M., Winemiller, C., Zach, L. A. & Zuna, R., Jan 14 2016, In : New England Journal of Medicine. 374, 2, p. 135-145 11 p.

Research output: Contribution to journalArticle

476 Scopus citations

In vitro characterization of design and compressive properties of 3D-biofabricated/decellularized hybrid grafts for tracheal tissue engineering

Johnson, C., Sheshadri, P., Ketchum, J. M., Narayanan, L. K., Weinberger, P. M. & Shirwaiker, R. A., Jun 1 2016, In : Journal of the Mechanical Behavior of Biomedical Materials. 59, p. 572-585 14 p.

Research output: Contribution to journalArticle

15 Scopus citations

Mechanical Modeling of the Human Cricoid Cartilage Using Computer-Aided Design: Applications in Airway Balloon Dilation Research

Johnson, C. M., Howell, J. T., Mettenburg, D. J., Rueggeberg, F., Howell, R. J., Postma, G. N. & Weinberger, P. M., Jan 2016, In : Annals of Otology, Rhinology and Laryngology. 125, 1, p. 69-76 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Tiny Bubbles; Composite Cocktails for Medical Applications

Wicks, G. G., Hill, W. D. & Weinberger, P. M., Jan 1 2016, In : International Journal of Applied Glass Science. 7, 2, p. 164-172 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Transgelin increases metastatic potential of colorectal cancer cells in vivo and alters expression of genes involved in cell motility

Zhou, H. M., Fang, Y. Y., Weinberger, P. M., Ding, L. L., Cowell, J. K., Hudson, F. Z., Ren, M., Lee, J. R., Chen, Q. K., Su, H., Dynan, W. S. & Lin, Y., Feb 4 2016, In : BMC Cancer. 16, 1, 55.

Research output: Contribution to journalArticle

14 Scopus citations

Why sinonasal disease spares the inferior turbinate: An immunohistochemical analysis

White, L. C., Weinberger, P. M., Coulson, H., Guo, D., Jang, D., Gurrola, J. & Kountakis, S. E., May 1 2016, In : Laryngoscope. 126, 5, p. E179-E183

Research output: Contribution to journalArticle

2 Scopus citations
2015

Altered connexin 43 expression underlies age-dependent decrease of regulatory T cell suppressor function in nonobese diabetic mice

Kuczma, M., Wang, C. Y., Ignatowicz, L., Gourdie, R. & Kraj, P., Jun 1 2015, In : Journal of Immunology. 194, 11, p. 5261-5271 11 p.

Research output: Contribution to journalArticle

11 Scopus citations

A novel temporal bone simulation model using 3D printing techniques

Mowry, S. E., Jammal, H., Myer, C., Solares, C. A. & Weinberger, P., Oct 1 2015, In : Otology and Neurotology. 36, 9, p. 1562-1565 4 p.

Research output: Contribution to journalArticle

46 Scopus citations

Comprehensive genomic characterization of head and neck squamous cell carcinomas

The Cancer Genome Atlas Network, Jan 29 2015, In : Nature. 517, 7536, p. 576-582 7 p.

Research output: Contribution to journalArticle

1436 Scopus citations

Delineation of gastric cancer subtypes by co-regulated expression of receptor tyrosine kinases and chemosensitivity genes

Li, S. C., Ma, R., Wu, J. Z., Xiao, X., Wu, W., Li, G., Chen, B., Sharma, A. K., Bai, S., Dun, B. Y., She, J-X. & Tang, J. H., Sep 11 2015, In : American Journal of Translational Research. 7, 8, p. 1429-1439 11 p.

Research output: Contribution to journalArticle

8 Scopus citations

Differences in expression level of Helios and neuropilin-1 do not distinguish thymus-derived from extrathymically-induced CD4+Foxp3+ regulatory T cells

Szurek, E., Cebula, A., Wojciech, L., Pietrzak, M., Rempala, G., Kisielow, P. & Ignatowicz, L., Oct 23 2015, In : PloS one. 10, 10, e0141161.

Research output: Contribution to journalArticle

64 Scopus citations

Evaluating kinase ATP uptake and tyrosine phosphorylation using multiplexed quantification of chemically labeled and post-translationally modified peptides

Fang, B., Hoffman, M. A., Mirza, A. S., Mishall, K. M., Li, J., Peterman, S. M., Smalley, K. S. M., Shain, K. H., Weinberger, P. M., Wu, J., Rix, U., Haura, E. B. & Koomen, J. M., Jun 15 2015, In : Methods. 81, p. 41-49 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Tracheal Size Variability is Associated with Sex: Implications for Endotracheal Tube Selection

Karmakar, A., Pate, M. B., Solowski, N. L., Postma, G. N. & Weinberger, P. M., Feb 1 2015, In : Annals of Otology, Rhinology and Laryngology. 124, 2, p. 132-136 5 p.

Research output: Contribution to journalArticle

14 Scopus citations

Tregs strip dendritic cells of CD70 to regulate Th1 differentiation

Wojciech, L. & Ignatowicz, L., May 12 2015, In : EMBO Journal. 34, 10, p. 1290-1292 3 p.

Research output: Contribution to journalArticle

1 Scopus citations
2013

Prenatal ultrasound exposure and association with postnatal hearing outcomes.

Harbarger, C. F., Weinberger, P. M., Borders, J. C. & Hughes, C. A., Jan 31 2013, In : Journal of otolaryngology - head & neck surgery = Le Journal d'oto-rhino-laryngologie et de chirurgie cervico-faciale. 42, 3, p. 1-5 5 p.

Research output: Contribution to journalArticle

2 Scopus citations
2011

Discovery and validation of serum protein changes in type 1 diabetes patients using high throughput two dimensional liquid chromatography-mass spectrometry and immunoassays.

Zhi, W., Sharma, A., Purohit, S., Miller, E., Bode, B., Anderson, S. W., Reed, J. C., Steed, R. D., Steed, L., Hopkins, D. & She, J. X., Nov 1 2011, In : Molecular & cellular proteomics : MCP. 10, 11

Research output: Contribution to journalArticle

40 Scopus citations
2010

Nuclear factor kappa-B and histopathology of chronic gastritis

Moorchung, N., Srivastava, A. N., Sharma, A. K., Achyut, B. R. & Mittal, B., Aug 12 2010, In : Indian Journal of Pathology and Microbiology. 53, 3, p. 418-21 4 p.

Research output: Contribution to journalArticle

7 Scopus citations