Calculated based on number of publications stored in Pure and citations from Scopus
1985 …2024

Research activity per year

Search results

  • 2024

    Intake of B vitamins and the risk of developing islet autoimmunity and type 1 diabetes in the TEDDY study

    Hakola, L., Mramba, L. K., Uusitalo, U., Andrén Aronsson, C., Hummel, S., Niinistö, S., Erlund, I., Yang, J., Rewers, M. J., Akolkar, B., McIndoe, R. A., Rich, S. S., Hagopian, W. A., Ziegler, A., Lernmark, Å., Toppari, J., Krischer, J. P., Norris, J. M. & Virtanen, S. M., 2024, (Accepted/In press) In: European Journal of Nutrition.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • 2023

    Dietary Intake and Body Mass Index Influence the Risk of Islet Autoimmunity in Genetically At-Risk Children: A Mediation Analysis Using the TEDDY Cohort

    Andrén Aronsson, C., Tamura, R., Vehik, K., Uusitalo, U., Yang, J., Haller, M. J., Toppari, J., Hagopian, W., McIndoe, R. A., Rewers, M. J., Ziegler, A. G., Akolkar, B., Krischer, J. P., Norris, J. M., Virtanen, S. M. & Elding Larsson, H., 2023, In: Pediatric Diabetes. 2023, 3945064.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • Gastrointestinal Infections Modulate the Risk for Insulin Autoantibodies as the First-Appearing Autoantibody in the TEDDY Study

    On behalf of the TEDDY Study Group, Nov 2023, In: Diabetes Care. 46, 11, p. 1908-1915 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • High serum levels of inflammatory markers are associated with early recurrence in patients with high-grade serous ovarian cancer after platinum therapy

    Brzezinska, B., Mysona, D. P., Richardson, K. P., Rungruang, B., Hopkins, D., Bearden, G., Higgins, R., Johnson, M., Satter, K. B., McIndoe, R., Ghamande, S. & Purohit, S., Dec 2023, In: Gynecologic Oncology. 179, p. 1-8 8 p.

    Research output: Contribution to journalArticlepeer-review

  • HLA Genotype and Probiotics Modify the Association Between Timing of Solid Food Introduction and Islet Autoimmunity in the TEDDY Study

    TEDDY study group, Oct 2023, In: Diabetes Care. 46, 10, p. 1839-1847 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • Ovarian recurrence risk assessment using machine learning, clinical information, and serum protein levels to predict survival in high grade ovarian cancer

    Mysona, D. P., Purohit, S., Richardson, K. P., Suhner, J., Brzezinska, B., Rungruang, B., Hopkins, D., Bearden, G., Higgins, R., Johnson, M., Bin Satter, K., McIndoe, R. & Ghamande, S., Dec 2023, In: Scientific reports. 13, 1, 20933.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Physical Activity and the Development of Islet Autoimmunity and Type 1 Diabetes in 5-to 15-Year-Old Children Followed in the TEDDY Study

    Liu, X., Johnson, S. B., Lynch, K. F., Cordan, K., Pate, R., Butterworth, M. D., Lernmark, Å., Hagopian, W. A., Rewers, M. J., McIndoe, R. A., Toppari, J., Ziegler, A. G., Akolkar, B., Krischer, J. P. & Yang, J., Jul 2023, In: Diabetes Care. 46, 7, p. 1409-1416 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • Possible heterogeneity of initial pancreatic islet beta-cell autoimmunity heralding type 1 diabetes

    The TEDDY study group, Aug 2023, In: Journal of Internal Medicine. 294, 2, p. 145-158 14 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    1 Scopus citations
  • SARS-CoV-2 - No Increased Islet Autoimmunity or Type 1 Diabetes in Teens

    Krischer, J. P., Lernmark, Å., Hagopian, W. A., Rewers, M. J., Mcindoe, R., Toppari, J., Ziegler, A. G. & Akolkar, B., 2023, In: New England Journal of Medicine. 389, 5, p. 474-475 2 p.

    Research output: Contribution to journalLetterpeer-review

    Open Access
    4 Scopus citations
  • 2022

    A novel network based linear model for prioritization of synergistic drug combinations

    Li, J., Xu, H. & McIndoe, R. A., Apr 2022, In: PloS one. 17, 4 April, e0266382.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    5 Scopus citations
  • Is staff consistency important to parents’ satisfaction in a longitudinal study of children at risk for type 1 diabetes: the TEDDY study

    TEDDY study group, Dec 2022, In: BMC Endocrine Disorders. 22, 1, 19.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • Rising Hemoglobin A1c in the Nondiabetic Range Predicts Progression of Type 1 Diabetes As Well As Oral Glucose Tolerance Tests

    TrialNet Study Group & TEDDY study group, Oct 2022, In: Diabetes Care. 45, 10, p. 2342-2349 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    3 Scopus citations
  • 2021

    Children’s erythrocyte fatty acids are associated with the risk of islet autoimmunity

    Repository, Other contributors, The TEDDY study group, Colorado Clinical Center, Finland Clinical Center, Georgia/Florida Clinical Center, Germany Clinical Center, Sweden Clinical Center, Washington Clinical Center, Pennsylvania Satellite Center, Data Coordinating Center, Past staff, Autoantibody Reference Laboratories, Dietary Biomarkers Laboratory, HLA Reference Laboratory & SNP Laboratory, Dec 2021, In: Scientific reports. 11, 1, 3627.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    9 Scopus citations
  • Dynamic changes in immune gene co-expression networks predict development of type 1 diabetes

    Repository, RNA Laboratory and Gene Expression Laboratory, SNP Laboratory, The TEDDY study group, Colorado Clinical Center, Finland Clinical Center, Georgia/Florida Clinical Center, Germany Clinical Center, Sweden Clinical Center, Washington Clinical Center, Pennsylvania Satellite Center, Data Coordinating Center, Autoantibody Reference Laboratories & HLA Reference Laboratory, Dec 2021, In: Scientific reports. 11, 1, 22651.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • 2020

    A big-data approach to understanding metabolic rate and response to obesity in laboratory mice

    Mouse Metabolic Phenotyping Center Energy Balance Working Group, May 2020, In: eLife. 9, p. 1-34 34 p., e53560.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    43 Scopus citations
  • A combined risk score enhances prediction of type 1 diabetes among susceptible children

    Committees, Aug 1 2020, In: Nature Medicine. 26, 8, p. 1247-1255 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    74 Scopus citations
  • Persistent STAT5 activation reprograms the epigenetic landscape in CD4+ T cells to drive polyfunctionality and antitumor immunity

    Ding, Z. C., Shi, H., Aboelella, N. S., Fesenkova, K., Park, E. J., Liu, Z., Pei, L., Li, J., McIndoe, R. A., Xu, H., Piazza, G. A., Blazar, B. R., Munn, D. H. & Zhou, G., Oct 30 2020, In: Science immunology. 5, 52, aba5962.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    34 Scopus citations
  • 2019

    Metabolite-related dietary patterns and the development of islet autoimmunity

    The TEDDY study group, Dec 1 2019, In: Scientific reports. 9, 1, 14819.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    28 Scopus citations
  • The relationship between breastfeeding and reported respiratory and gastrointestinal infection rates in young children

    TEDDY study group, Sep 18 2019, In: BMC pediatrics. 19, 1, 339.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    88 Scopus citations
  • 2018

    Cesarean Section on the Risk of Celiac Disease in the Offspring: The Teddy Study

    for the TEDDY Study Group, Mar 1 2018, In: Journal of Pediatric Gastroenterology and Nutrition. 66, 3, p. 417-424 8 p.

    Research output: Contribution to journalArticlepeer-review

    38 Scopus citations
  • Frequent HPV-independent p16/INK4A overexpression in head and neck cancer

    Lechner, M., Chakravarthy, A. R., Walter, V., Masterson, L., Feber, A., Jay, A., Weinberger, P. M., McIndoe, R. A., Forde, C. T., Chester, K., Kalavrezos, N., O'Flynn, P., Forster, M., Jones, T. M., Vaz, F. M., Hayes, D. N. & Fenton, T. R., Aug 2018, In: Oral Oncology. 83, p. 32-37 6 p.

    Research output: Contribution to journalArticlepeer-review

    36 Scopus citations
  • The Environmental Determinants of Diabetes in the Young (TEDDY) Study: 2018 Update

    The TEDDY study group, Dec 1 2018, In: Current diabetes reports. 18, 12, 136.

    Research output: Contribution to journalReview articlepeer-review

    69 Scopus citations
  • 2017

    Analgesic antipyretic use among young children in the TEDDY study: No association with islet autoimmunity

    for the TEDDY Study Group, May 16 2017, In: BMC pediatrics. 17, 1, 127.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    16 Scopus citations
  • Association between early-life antibiotic use and the risk of islet or celiac disease autoimmunity

    Kemppainen, K. M., Vehik, K., Lynch, K. F., Larsson, H. E., Canepa, R. J., Simell, V., Koletzko, S., Liu, E., Simell, O. G., Toppari, J., Ziegler, A. G., Rewers, M. J., Lernmark, Å., Hagopian, W. A., She, J-X., Akolkar, B., Schatz, D. A., Atkinson, M. A., Blaser, M. J., Krischer, J. P., & 185 othersHyöty, H., Agardh, D., Triplett, E. W., Bautista, K., Baxter, J., Bedoy, R., Felipe-Morales, D., Driscoll, K., Frohnert, B. I., Gesualdo, P., Hoffman, M., Karban, R., Norris, J., Samper-Imaz, A., Steck, A., Waugh, K., Wright, H., Adamsson, A., Ahonen, S., Ilonen, J., Jokipuu, S., Kallio, T., Karlsson, L., Kähönen, M., Knip, M., Kovanen, L., Koreasalo, M., Kurppa, K., Latva-Aho, T., Lönnrot, M., Mäntymäki, E., Multasuo, K., Mykkänen, J., Niininen, T., Niinistö, S., Nyblom, M., Rajala, P., Rautanen, J., Riikonen, A., Riikonen, M., Rouhiainen, J., Romo, M., Simell, T., Sjöberg, M., Stenius, A., Leppänen, M., Vainionpää, S., Varjonen, E., Veijola, R., Virtanen, S. M., Vähä-Mäkilä, M., Åkerlund, M., Lindfors, K., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Adams, J., Silvis, K., Haller, M., Gardiner, M., McIndoe, R. A., Sharma, A. K., William, J., Young, G., Anderson, S. W., Jacobsen, L., Beyerlein, A., Bonifacio, E., Hummel, M., Hummel, S., Foterek, K., Janz, N., Kersting, M., Knopff, A., Peplow, C., Roth, R., Scholz, M., Stock, J., Warncke, K., Wendel, L., Winkler, C., Aronsson, C. A., Ask, M., Bremer, J., Carlsson, U. M., Cilio, C., Ericson-Hallström, E., Fransson, L., Gard, T., Gerardsson, J., Bennet, R., Hansen, M., Hansson, G., Hyberg, S., Johansen, F., Jonsdottir, B., Lindström, M., Lundgren, M., Månsson-Martinez, M., Markan, M., Melin, J., Mestan, Z., Ottosson, K., Rahmati, K., Ramelius, A., Salami, F., Sibthorpe, S., Sjöberg, B., Swartling, U., Amboh, E. T., Törn, C., Wallin, A., Wimar, Å., Åberg, S., Killian, M., Crouch, C. C., Skidmore, J., Carson, J., Dalzell, M., Dunson, K., Hervey, R., Johnson, C., Lyons, R., Meyer, A., Mulenga, D., Tarr, A., Uland, M., Willis, J., Becker, D., Franciscus, M., Smith, M. E. D. E., Daftary, A., Klein, M. B., Yates, C., Abbondondolo, M., Austin-Gonzalez, S., Avendano, M., Baethke, S., Brown, R., Burkhardt, B., Butterworth, M., Clasen, J., Cuthbertson, D., Eberhard, C., Fiske, S., Garcia, D., Garmeson, J., Gowda, V., Heyman, K., Laras, F. P., Lee, H. S., Liu, S., Liu, X., Lynch, K., Malloy, J., McCarthy, C., Meulemans, S., Parikh, H., Shaffer, C., Smith, L., Smith, S., Sulman, N., Tamura, R., Uusitalo, U., Vijayakandipan, P., Wood, K., Yang, J., Ballard, L., Hadley, D., McLeod, W., Bourcier, K., Briese, T., Johnson, S. B., Yu, L., Miao, D., Bingley, P., William's, A., Chandler, K., Rokni, S., Willia, C., Wyatt, R., George, G., Grace, S. & Mulholland, N., Dec 2017, In: JAMA Pediatrics. 171, 12, p. 1217-1225 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    75 Scopus citations
  • Joint modeling of longitudinal autoantibody patterns and progression to type 1 diabetes: results from the TEDDY study

    Ancillary Studies, Diet, Genetics, Human Subjects/Publicity/Publications, Immune Markers, Infectious Agents, Laboratory Implementation, Maternal Studies, Psychosocial, Quality Assurance, Steering, Study Coordinators, Celiac Disease, Clinical Implementation & TEDDY study group, Nov 1 2017, In: Acta Diabetologica. 54, 11, p. 1009-1017 9 p.

    Research output: Contribution to journalArticlepeer-review

    23 Scopus citations
  • Psychological manifestations of celiac disease autoimmunity in young children

    The TEDDY study group, Mar 2017, In: Pediatrics. 139, 3, e20162848.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    32 Scopus citations
  • 2016

    A Comparison of Rule-based Analysis with Regression Methods in Understanding the Risk Factors for Study Withdrawal in a Pediatric Study

    TEDDY study group, Aug 26 2016, In: Scientific reports. 6, 30828.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    13 Scopus citations
  • Association of Early Exposure of Probiotics and Islet Autoimmunity in the TEDDY Study

    Dietary Biomarkers Laboratory, Project Scientist, Other contributors, Autoantibody Reference Laboratories, Cortisol Laboratory, Data Coordinating Center, Pennsylvania Satellite Center, Washington Clinical Center, Sweden Clinical Center, Finland Clinical Center, Germany Clinical Center, Georgia/Florida Clinical Center, for the TEDDY Study Group, SNP Laboratory, RNA Laboratory and Gene Expression Laboratory, Microbiome and Viral Metagenomics Laboratory, Metabolomics Laboratory, HbA1c Laboratory, HLA Reference Laboratory, OGTT Laboratory, & 2 othersProteomics Laboratory & Repository, Jan 2016, In: JAMA Pediatrics. 170, 1, p. 20-28 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    210 Scopus citations
  • The Geropathology research network: An interdisciplinary approach for integrating pathology into research on aging

    Ladiges, W., Ikeno, Y., Niedernhofer, L., Mcindoe, R. A., Ciol, M. A., Ritchey, J. & Liggitt, D., Apr 1 2016, In: Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 71, 4, p. 431-434 4 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    10 Scopus citations
  • 2015

    Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

    Onengut-Gumuscu, S., Chen, W. M., Burren, O., Cooper, N. J., Quinlan, A. R., Mychaleckyj, J. C., Farber, E., Bonnie, J. K., Szpak, M., Schofield, E., Achuthan, P., Guo, H., Fortune, M. D., Stevens, H., Walker, N. M., Ward, L. D., Kundaje, A., Kellis, M., Daly, M. J., Barrett, J. C., & 418 othersCooper, J. D., Deloukas, P., Todd, J. A., Wallace, C., Concannon, P., Rich, S. S., Baskerville, T., Bautista, N., Bhatia, E., Bhatia, V., Hasan, K. B., Bonnici, F., Brodnicki, T., Browning, B., Cameron, F., Chaichanwatanakul, K., Cheung, P. T., Colman, P., Cotterill, A., Couper, J., Crock, P., Cutfield, R., Davis, T., Dixon, P., Donaghue, K., Dowling, K., Drury, P., Dye, S., Gellert, S., Ghani, R. A., Greer, R., Han, X., Harrison, L., Homatopoulos, N., Ji, L., Jones, T., Yin, L. K., Kamaruddin, N. A., Kanga, U., Kanungo, A., Kaur, G., Kek, B., Knowles, S., Krebs, J., Kumar, N., Lee, Y. J., Li, X., Liktimaskul, S., Lloyd, M., Loth, A., Louey, A., Mehra, N., Merriman, T., Min, L., Morahan, G., Moses, R., Mraz, G., Murphy, R., Nicholson, I., Panelo, A., Poh, P., Price, G., Ratnam, N., Sanjeevi, C., Sedimbi, S., Shen, S., Ying, G. S., Tait, B., Tandon, N., Thomas, A., Varney, M., Weerakulwattana, P., Willis, J., Akwo, E. A., Albret, L., Ampudia-Blasco, F., Argente, J., Avbelj, M., Babadjanova, G., Badenhoop, K., Battelino, T., Beilhack, G., Bergholdt, R., Bingley, P., Boehm, B., Bolidson, J., Brismar, K., Brorsson, C., Carlson, J., Castano, L., Chandler, K., Cherubini, V., Cinek, O., Cipponeri, E., Collado, R. C., de Leiva, A., Dzivite, I., Fagulha, A., Balcells, M. F., Cuartero, B. G., Lacalle, C. G., Guja, C., Gutiérrez, P., Hamou, A., Hatziagelaki, E., Heath, S., Heilman, K., Helmberg, W., Hermon, O., Hernandez, M., Holzheu, I., Hosszufalusi, N., Ilonen, J., Ionescu-Tirgoviste, C., Johannesen, J., Julier, C., Kahles, H., Kinalska, I., Knip, M., Kockum, I., Kojo, E., Kordonouri, O., Kretowski, A., Krikovszky, D., Kurkhaus, A., Kuzmicki, M., Lavant, E., Long, A., Ludvigsson, J., Madacsy, L., Maliszewska, K., Marga, M., Martinez, M. P., Mauricio, D., Mazurkievicz, G., Nerup, J., Norkus, A., Mogollon, F. J. N., Okruszko, A., Pettinari, C., Phillip, M., Pirags, V., Pociot, F., Pozzilli, P., Racasan, R., Raile, K., Rappner, R., Troyano, M. J. R., Roep, B. O., Rokni, S., Rosinger, S., Rubio-Cabezas, O., Ruckgaber, C., Satman, I., Schober, E., Seufert, J., Sing, R., Skrha, J., Sobngwi, E., Somerville, M., Spinas, G., Sumnik, Z., Tilmann, V., Undlien, D., Urbanavicius, V., der Auwera, B. V., San Miguel, F. V., Vazeo-Gerasimidi, A., Velickiene, D., Wägner, A., Walter, M., Williams, A., Ziegler, A., Agleham, M., Aldrich, A., Alemzadeh, R., Alper, C., Aly, T., Anastassiou, D., Arora, S., Austin, A., Becker, D., Benoist, C., Berka, N., Bhatia, S., Bonella, P., Bottini, N., Boyle, S., Braden, J., Brady, B., Brickman, W., Christensen, R., Couch, R., Counts, D., Crandall, J., Daniels, M., Dolan, L., Donaldson, D., Doria, A., Eisenbarth, G., Elder, J., El-Hajj, R., Erlich, H., Fain, P., Fear, A. L., Ferry, R., Fiallo-Scharer, R., Geraghty, D., Ghosh, S., Gitelman, S., Godwin, M., Goland, R., Goodman, N., Goodwin, G., Gravely, J., Greenbaum, C., Gudgeon, C., Gunville, F., Hagopian, W., Hakonarson, H., Hansen, J., Harrington, K., Hassing, J., Hilliker, W., Hoffman, R., Hulbert, E., Izquierdo, R., Jospe, N., Kaiserman, K., Kaufman, F., Kim, S., Kloos, E., Kosoy, R., Lane, J., Lane, J., Lawrence, J., Levetan, C., Levin, P., Lipton, R., Lonsdale, J., Magnuson, V., Marks, J., Mayer-Davis, B., McEvoy, R., McIndoe, R., Merkle, L., Metzger, D., Miao, D., Mickelson, E., Moonsamy, P., Moore, W., Moran, A., Noble, J., Olsem, G., Orban, T., Orlowski, C., Paterson, A., Pietropaolo, M., Pihoker, C., Polychronakos, C., Post, J., Postellon, D., Pugliese, A., Qu, H. Q., Quattrin, T., Rappaport, M., Raskin, P., Risbeck, H., Rodriguez, H., Rodriguez, L., Rogers, M., Rubalcava, L., Russell, B., Schatz, D., Scott, C., She, J-X., Shilling, H., Shulman, D., Soyka, L., Speiser, P., Starkman, H., Steck, A., Stender, S., Stratton, L., Sur, D., Taback, S., Thrailkill, K., Toth, E., Trymbiski, P., Tsalikian, E., Vertachnik, K., Wahlen, J., Wang, X., Weber, S., Wherrett, D., Willi, S., Wilson, D., Youkey, J., Young, N., Yu, L., Zhao, L. P., Zimmerman, D., Adlem, E., Allen, J., Brown, J., Clarke, P., Clayton, D., Coleman, G., Cucca, F., Davison, L., Downes, K., Duley, S., Dunger, D., Esposito, L., Everett, V., Field, S., Hafler, J., Hardy, M., Harrison, D., Harrison, I., Hawkins, S., Healy, B., Hood, S., Howell, S., Howson, J., Maisuria, M., Meadows, W., Mistry, T., Nezhenstsev, S., Nutland, S., Ovington, N., Plagnol, V., Rainbow, D., Rainbow, K., Raj, S., Schuilenburg, H., Simpson, A., Smink, L., Smyth, D., Taylor, N., Tuomilehto, J., Wicker, L., Widmer, B., Wilson, M., Withers, H., Yang, J., Brown, M., Crews, A., Griffin, J., Hall, M., Harnish, T., Hepler, J., Hilner, J., King, N., Lohman, K., Lu, L., Nail, J., Perdue, L., Pierce, J., Reboussin, D., Rushing, S., Sale, M., Sides, E., Snively, B., Teuschler, H., Theil, G., Wagenknecht, L., Williams, D., Akolkar, B., McKeon, C., Nierras, C., Thomson, E., Altshuler, D., Au, K., Bain, S., Barcellos, L., Barral, S., Becker, T., Briggs, F., Bronson, P., de Bakker, P., Devlin, B., Eike, M. C., Field, L., Gabriel, S., Garge, N., Gaudieri, S., Goldstein, B., Gorodezky, C., Hamon, S., He, C., Humphreys, K., James, I., Lathrop, M., Lie, B. A., Li, D., Mack, S., McGinnis, R., McKinnon, E., McLaren, W., Nolan, D., Olsson, M., Ott, J., Owerbach, D., Patterson, C., Podolsky, R., Ramsay, P., Rangantah, V., Risch, N., Ronningen, K. S., Shao, X., Single, R., Steffes, M., Thomson, G., Valdes, A. M., Vandiedonck, C., Whittaker, P. & Zhang, Q., Apr 28 2015, In: Nature Genetics. 47, 4, p. 381-386 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    468 Scopus citations
  • Maternal anxiety about a child's diabetes risk in the TEDDY study: The potential role of life stress, postpartum depression, and risk perception

    TEDDY study group, Jun 1 2015, In: Pediatric Diabetes. 16, 4, p. 287-298 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    20 Scopus citations
  • 2014

    Biomarker discovery study design for type 1 diabetes in The Environmental Determinants of Diabetes in the Young (TEDDY) study

    Lee, H. S., Burkhardt, B. R., Mcleod, W., Smith, S., Eberhard, C., Lynch, K., Hadley, D., Rewers, M., Simell, O., She, J. X., Hagopian, B., Lernmark, A., Akolkar, B., Ziegler, A. G., Krischer, J. P., Barriga, K., Bautista, K., Baxter, J., Eisenbarth, G., Frank, N., & 208 othersGesualdo, P., Hoffman, M., Ide, L., Karban, R., Liu, E., Norris, J., Waugh, K., Samper-Imaz, A., Steck, A., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Silvis, K., Haller, M., Shankar, M., Sheehan, E., Gardiner, M., McIndoe, R., Liu, H., Nechtman, J., Sharma, A., Williams, J., Foghis, G., Anderson W., S. W., Beyerlein, A., Bonifacio, E., Hummel, M., Hummel, S., Foterek, K., Kersting, M., Knopff, A., Koletzko, S., Peplow, C., Roth, R., Schenke, J., Stock, J., Strauss, E., Warncke, K., Winkler, C., Simell G., O. G., Hyoty, H., Ilonen, J., Knip, M., Koivu, A., Koreasalo, M., Kahonen, M., Lonnrot, M., Multasuo, K., Mantymaki, E., Mykkanen, J., Nanto-Salonen, K., Niininen, T., Nyblom, M., Rautanen, J., Riikonen, A., Romo, M., Simell, A., Simell, B., Simell, T., Simell, V., Sjoberg, M., Stenius, A., Toppari, J., Varjonen, E., Veijola, R., Virtanen M., S. M., Akerlund, M., Agardh, D., Andrén-Aronsson, C., Ask, M., Bremer, J., Carlsson, U. M., Cilio, C., Ericson-Hallstrom, E., Fransson, L., Gard, T., Gerardsson, J., Hakansson, R., Hansen, M., Hansson, G., Hyberg, S., Johansen, F., Jonasdottir, B., Jonsson, L., Larsson, H., Lernmark, B., Mansson-Martinez, M., Markan, M., Massadakis, T., Melin, J., Mestan, Z., Nilsson, A., Nilsson, E., Rahmati, K., Rosenquist, A., Salami, F., Jarvirova, M. S., Sibthorpe, S., Sjoberg, B., Swartling, U., Trulsson, E., Torn, C., Wallin, A., Wimar, A., Aberg, S., Hagopian A., W. A., Yan, X., Killian, M., Crouch, C. C., Hay M., K. M., Ayres, S., Adams, C., Bratrude, B., Coughlin, D., Fowler, G., Franco, C., Hammar, C., Heaney, D., Marcus, P., Meyer, A., Mulenga, D., Scott, E., Skidmore, J., Stabbert, J., Stepitova, V., Williams, N., Becker, D., Franciscus, M., Dalmagro-Elias, M. E., Daftary, A., Klein, M. B., Abbondondolo, M., Austin-Gonzalez, S., Brown, R., Burkhardt, B., Butterworth, M., Cuthbertson, D., Eberhard, C., Fiske, S., Gowda, V., Lane, P., Liu, S., Liu, X., Malloy, J., McCarthy, C., McLeod, W., Smith, L., Tamura, R., Uusitalo, U., Vehik, K., Washington, E., Yang, J., Bourcier, K., Briese, T., Johnson, S. B., Oberste, S., Triplett, E., Yu, L., Miao, D., Bingley, P., Williams, A., Chandler, K., Rokni, S., Long, A., Boldison, J., Butterly, J., Broadhurst, J., Carreno, G., Curnock, R., Easton, P., Geoghan, I., Goode, J., Pearson, J., Reed, C., Ridewood, S., Wyatt, R., Eriksson, E. A., Karlsson, E. L., Erlund, I., Salminen, I., Sundvall, J., Leiviska, J., Lehtonen, M., Little R., R. R., Tennill L., A. L., Erlich, H., Bugawan, T., Alejandrino, M., Fiehn, O., Wikoff, B., Kind, T., Palazoglu, M., Wong, J., Wohlgemuth, G., Petrosino F., J. F., Marcovina M., S. M., Higgins, H., Ke, S., Zhao, Y., Jiang, N., Rich S., S. S., Chen, W. M., Onengut-Gumuscu, S., Farber, E., Pickin, R. R., Davis, J. & Gallo, D., Jul 2014, In: Diabetes/Metabolism Research and Reviews. 30, 5, p. 424-434 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    37 Scopus citations
  • The same self-peptide selects conventional and regulatory CD4 + T cells with identical antigen receptors

    Wojciech, L., Ignatowicz, A., Seweryn, M., Rempala, G., Singh Pabla, S., McIndoe, R. A., Kisielow, P. & Ignatowicz, L., 2014, In: Nature communications. 5, 5061.

    Research output: Contribution to journalArticlepeer-review

    17 Scopus citations
  • 2013

    Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota

    Cebula, A., Seweryn, M., Rempala, G. A., Pabla, S. S., McIndoe, R. A., Denning, T. L., Bry, L., Kraj, P., Kisielow, P. & Ignatowicz, L., 2013, In: Nature. 497, 7448, p. 258-262 5 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    312 Scopus citations
  • 2012

    Differences in recruitment and early retention among ethnic minority participants in a large pediatric cohort: The TEDDY Study

    Baxter, J., Vehik, K., Johnson, S. B., Lernmark, B., Roth, R., Simell, T., Rewers, M., Barriga, K., Bautista, K., Baxter, J., Eisenbarth, G., Frank, N., Gesualdo, P., Hoffman, M., Ide, L., Karban, R., Liu, E., Norris, J., Waugh, K., Samper-Imaz, A., & 149 othersSteck, A., She, J-X., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Silvis, K., Haller, M., Shankar, M., English, K., McIndoe, R. A., Liu, H., Nechtman, J., Williams, J., Foghis, G., Stephen, W., Anderson, M. D., Ziegler, A. G., Achenbach, A., Boerschmann, H., Bonifacio, E., Bunk, M., Försch, J., Henneberger, L., Hummel, M., Hummel, S., Joslowski, G., Kersting, M., Knopff, A., Kocher, N., Koletzko, S., Krause, S., Mann, A., Matzke, C., Mittermeier, A., Peplow, C., Pflüger, M., Ramminger, C., Strauss, E., Rash-Sur, S., Roth, R., Schenkel, J., Stock, J., Voit, K., Winkler, C., Wosch, A., Zwilling, M., Simell, O. G., Nanto-Salonen, K., Ilonen, J., Knip, M., Tuula Simell, V., Hyöty, H., Virtanen, S. M., Kronberg-Kippilä, C., Sjöberg, M., Simell, B., Ruohonen, E., Romo, M., Mantymaki, E., Schroderus, H., Nyblom, M., Stenius, A., Lernmark, Å., Agardh, D., Almgren, P., Andersson, E., Andrén-Aronsson, C., Ask, M., Karlsson, U. M., Cilio, C., Bremer, J., Ericson-Hallström, E., Gard, T., Gerardsson, J., Hansson, G., Hansen, M., Hyberg, S., Håkansson, R., Johansen, F., Jonsson, L., Larsson, H., Lernmark, B., Markan, M., Massadakis, T., Melin, J., Månsson-Martinez, M., Nilsson, A., Rahmati, K., Järvirova, M. S., Sibthorpe, S., Sjöberg, B., Skogberg, A., Törn, C., Wallin, A., Wimar, Å., Åberg, S., Hagopian, W. A., Yan, X., Killian, M., Cowen Crouch, C., Hay, K. M., Ayres, S., Adams, C., Bratrude, B., Coughlin, D., Fowler, G., Franco, C., Hammar, C., Heaney, D., Marcus, P., Meyer, A., Mulenga, D., Scott, E., Skidmore, J., Stabbert, J., Stepitova, V., Williams, N., Becker, D., Franciscus, M., Dalmagro-Elias, M. E., Daftary, A., Krischer, J. P., Abbondondolo, M., Ballard, L., Brown, R., Burkhardt, B., Cuthbertson, D., Eberhard, C., Fiske, S., Gowda, V., Hadley, D., Lee, H. S., Liu, S., Lynch, K., Malloy, J., McCarthy, C., McLeod, W., Smith, L., Smith, S., Uusitalo, U., Vehik, K., Washington, E., Yang, J., Akolkar, B., Briese, T., Erlich, H., Johnson, S. B. & Oberste, S., Jul 2012, In: Contemporary Clinical Trials. 33, 4, p. 633-640 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    34 Scopus citations
  • Rare and functional SIAE variants are not associated with autoimmune disease risk in up to 66,924 individuals of European ancestry

    Type 1 Diabetes Genetics Consortium, UK Inflammatory Bowel Disease (IBD) Genetics Consortium & Wellcome Trust Case Control Consortium, Jan 1 2012, In: Nature Genetics. 44, 1, p. 3-5 3 p.

    Research output: Contribution to journalLetterpeer-review

    Open Access
    36 Scopus citations
  • Research resource: DkCOIN, the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) Consortium Interconnectivity Network: A pilot program to aggregate research resources generated by multiple research consortia

    McKenna, N. J., Howard, C. L., Aufiero, M., Easton-Marks, J., Steffen, D. L., Becnel, L. B., Magnuson, M. A., McIndoe, R. A. & Cartailler, J. P., Oct 1 2012, In: Molecular Endocrinology. 26, 10, p. 1675-1681 7 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • 2011

    Gene expression profiling of early-phase Sjögren's syndrome in C57BL/6.NOD-Aec1Aec2 mice identifies focal adhesion maturation associated with infiltrating leukocytes

    Peck, A. B., Saylor, B. T., Nguyen, L., Sharma, A. K., She, J-X., Nguyen, C. Q. & McIndoe, R. A., Jul 2011, In: Investigative Ophthalmology and Visual Science. 52, 8, p. 5647-5655 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    21 Scopus citations
  • 2010

    Designing and implementing sample and data collection for an international genetics study: The Type 1 Diabetes Genetics Consortium (T1DGC)

    the T1DGC, Aug 1 2010, In: Clinical Trials. 7, 1_suppl, p. S5-S32

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • Hepatic gene expression profiling reveals key pathways involved in leptin-mediated weight loss in ob/ob mice

    Sharma, A., Bartell, S. M., Baile, C. A., Chen, B., Podolsky, R. H., McIndoe, R. A. & She, J. X., 2010, In: PloS one. 5, 8, e12147.

    Research output: Contribution to journalArticlepeer-review

    23 Scopus citations
  • Para SAM: A parallelized version of the significance analysis of microarrays algorithm

    Sharma, A. K., Zhao, J., Podolsky, R. & McIndoe, R. A., Apr 15 2010, In: Bioinformatics. 26, 11, p. 1465-1467 3 p., btq161.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • 2009

    A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets

    Sharma, A., Podolsky, R., Zhao, J. & Mcindoe, R. A., 2009, In: Bioinformatics. 25, 9, p. 1152-1157 6 p.

    Research output: Contribution to journalArticlepeer-review

    16 Scopus citations
  • Differential gene expression in the salivary gland during development and onset of xerostomia in Sjögren's syndrome-like disease of the C57BL/6.NOD-Aec1Aec2 mouse

    Nguyen, C. Q., Sharma, A., Lee, B. H., She, J. X., McIndoe, R. A. & Peck, A. B., Apr 20 2009, In: Arthritis Research and Therapy. 11, 2, R56.

    Research output: Contribution to journalArticlepeer-review

    45 Scopus citations
  • Open Access
    34 Scopus citations
  • Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

    Barrett, J. C., Clayton, D. G., Concannon, P., Akolkar, B., Cooper, J. D., Erlich, H. A., Julier, C., Morahan, G., Nerup, J., Nierras, C., Plagnol, V., Pociot, F., Schuilenburg, H., Smyth, D. J., Stevens, H., Todd, J. A., Walker, N. M., Rich, S. S., Baskerville, T., Bautista, N., & 380 othersBhatia, E., Bhatia, V., Bin Hasan, K., Bonnici, F., Brodnicki, T., Cameron, F., Chaichanwatanakul, K., Cheung, P. T., Colman, P., Cotterill, A., Couper, J., Cutfield, R., Davis, T., Dixon, P., Donaghue, K., Dowling, K., Drury, P., Dye, S., Gellert, S., Abdul Ghani, R., Greer, R., Han, X., Harrison, L., Homatopoulos, N., Ji, L., Jones, T., Yin, L. K., Kamaruddin, N. A., Kanga, U., Kanungo, A., Kaur, G., Kek, B., Knowles, S., Krebs, J., Kumar, N., Lee, Y. J., Li, X., Liktimaskul, S., Lloyd, M., Loth, A., Louey, A., Mehra, N., Merriman, T., Min, L., Morahan, G., Moses, R., Mraz, G., Murphy, R., Nicholson, I., Panelo, A., Poh, P., Price, G., Ratnam, N., Sanjeevi, C., Sedimbi, S., Shen, S., Ying, G. S., Tait, B., Tandon, N., Thomas, A., Varney, M., Weerakulwattana, P., Willis, J., Albret, L., Ampudia-Blasco, F., Argente, J., Babadjanova, G., Badenhoop, K., Battelino, T., Beilhack, G., Bergholdt, R., Bingley, P., Boehm, B., Bolidson, J., Brorsson, C., Carlson, J., Castano, L., Chandler, K., Cinek, O., Cipponeri, E., Corripio, R., Garcia Cuartero, B., de Leiva, A., Fagulha, A., Fernandez Balcells, M., Guja, C., Gutierrez, P., Hatziagelaki, E., Heath, S., Helmberg, W., Hernandez, M., Holzheu, I., Hosszufalusi, N., Ionescu-Tirgoviste, C., Johannesen, J., Julier, C., Kahles, H., Knip, M., Kockum, I., Kojo, E., Koprivarova, K., Kordonouri, O., Kretowski, A., Krikovszky, D., Kurkhaus, A., Lalic, N., Lavant, E., Long, A., Ludvigsson, J., Madacsy, L., Marga, M., Mauricio, D., Mazurkievicz, G., Nerup, J., Novoa Mogollon, F. J., Petersen, M. T., Phillip, M., Pirags, V., Pociot, F., Pozzilli, P., Rappner, R., Roep, B., Rokni, S., Rosinger, S., Rubio-Cabezas, O., Ruckgaber, C., Satman, I., Schober, E., Seufert, J., Sing, R., Skrha, J., Sobngwi, E., Somerville, M., Spinas, G., Tilmann, V., Undlien, D., Urbanavicius, V., Van der Auwera, B., Vasquez San Miguel, F., Vazeo-Gerasimidi, A., Velickiene, D., Wagner, A., Williams, A., Wurzburger, M., Ziegler, A., Agleham, M., Aldrich, A., Alemzadeh, R., Aly, T., Arora, S., Austin, A., Becker, D., Benoist, C., Berka, N., Bhatia, S., Bonella, P., Bottini, N., Boyle, S., Brady, B., Brickman, W., Christensen, R., Concannon, P., Couch, R., Counts, D., Crandall, J., Daniels, M., Dolan, L., Donaldson, D., Doria, A., Eisenbarth, G., El-Hajj, R., Erlich, H., Fain, P., Fear, A. L., Ferry, R., Fiallo-Scharer, R., Ghosh, S., Gitelman, S., Godwin, M., Goland, R., Goodman, N., Goodwin, G., Gravely, J., Greenbaum, C., Gudgeon, C., Gunville, F., Hagopian, W., Hakonarson, H., Hansen, J., Harrington, K., Hassing, J., Hilliker, W., Hoffman, R., Hulbert, E., Izquierdo, R., Jospe, N., Kaiserman, K., Kaufman, F., Kim, S., Kloos, E., Kosoy, R., Lane, J., Lane, J., Lawrence, J., Levetan, C., Levin, P., Lipton, R., Lonsdale, J., Magnuson, V., Marks, J., Mayer-Davis, B., McEvoy, R., McIndoe, R. A., Merkle, L., Metzger, D., Miao, D., Mickelson, E., Moonsamy, P., Moore, W., Moran, A., Noble, J., Olsem, G., Onengut-Gumuscu, S., Orban, T., Orlowski, C., Paterson, A., Pietropaolo, M., Pihoker, C., Polychronakos, C., Post, J., Postellon, D., Pugliese, A., Qu, H., Quattrin, T., Rappaport, M., Raskin, P., Risbeck, H., Rodriguez, H., Rodriguez, L., Rogers, M., Russell, B., Schatz, D., Scott, C., She, J-X., Shulman, D., Soyka, L., Speiser, P., Starkman, H., Steck, A., Stender, S., Stratton, L., Sur, D., Taback, S., Thrailkill, K., Toth, E., Trymbiski, P., Tsalikian, E., Vertachnik, K., Wahlen, J., Wang, X., Weber, S., Wherrett, D., Willi, S., Wilson, D., Youkey, J., Young, N., Yu, L., Zimmerman, D., Adlem, E., Allen, J., Brown, J., Burren, O., Clarke, P., Clayton, D., Coleman, G., Cooper, J., Cucca, F., Duley, S., Dunger, D., Everett, V., Hardy, M., Harrison, D., Harrison, I., Hawkins, S., Healy, B., Hood, S., Howell, S., Maisuria, M., Meadows, W., Mistry, T., Nutland, S., Ovington, N., Schuilenburg, H., Simpson, A., Smink, L., Stevens, H., Taylor, N., Todd, J., Tuomilehto, J., Walker, N., Widmer, B., Wilson, M., Withers, H., Brown, M., Chen, W. M., Crews, A., Griffin, J., Hall, M., Harnish, T., Hepler, J., Hilner, J., King, N., Lohman, K., Lu, L., Mychaleckyj, J., Nail, J., Perdue, L., Pierce, J., Reboussin, D., Rich, S., Rushing, S., Sale, M., Sides, E., Snively, B., Teuschler, H., Theil, G., Williams, D., Akolkar, B., McKeon, C., Nierras, C., Thomson, E., Altshuler, D., Au, K., Bain, S., Barcellos, L., Barral, S., Becker, T., Briggs, F., Bronson, P., Daly, M., de Bakker, P., Deloukas, P., Devlin, B., Eike, M. C., Field, L., Gabriel, S., Garge, N., Gaudieri, S., Goldstein, B., Gorodezky, C., Hamon, S., He, C., Howson, J., Humphreys, K., James, I., Lathrop, M., Lie, B. A., Li, D., Mack, S., McGinnis, R., McKinnon, E., McLaren, W., Nolan, D., Olsson, M., Ott, J., Owerbach, D., Patterson, C., Podolsky, R., Ramsay, P., Rangantah, V., Risch, N., Ronningen, K. S., Shao, X., Single, R., Steffes, M., Thomson, G., Valdes, A. M., Vandiedonck, C., Whittaker, P. & Zhang, Q., Jun 1 2009, In: Nature Genetics. 41, 6, p. 703-707 5 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1381 Scopus citations
  • Mouse models of diabetic nephropathy

    Brosius, F. C., Alpers, C. E., Bottinger, E. P., Breyer, M. D., Coffman, T. M., Gurley, S. B., Harris, R. C., Kakoki, M., Kretzler, M., Leiter, E. H., Levi, M., McIndoe, R. A., Sharma, K., Smithies, O., Susztak, K., Takahashi, N. & Takahashi, T., Dec 1 2009, In: Journal of the American Society of Nephrology. 20, 12, p. 2503-2512 10 p.

    Research output: Contribution to journalReview articlepeer-review

    453 Scopus citations
  • 2008

    ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use

    Kraj, P., Sharma, A., Garge, N., Podolsky, R. & McIndoe, R. A., Apr 16 2008, In: BMC Bioinformatics. 9, 200.

    Research output: Contribution to journalArticlepeer-review

    24 Scopus citations
  • The IL-10 and IFN-γ pathways are essential to the potent immunosuppressive activity of cultured CD8+ NKT-like cells

    Zhou, L., Wang, H., Zhong, X., Jin, Y., Mi, Q. S., Sharma, A. K., McIndoe, R. A., Garge, N., Podolsky, R. & She, J-X., Jul 29 2008, In: Genome Biology. 9, 7, R119.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    13 Scopus citations
  • 2007

    A high-throughput population screening system for the estimation of genetic risk for type 1 diabetes: An application for the TEDDY (The Environmental Determinants of Diabetes in the Young) study

    Kiviniemi, M., Hermann, R., Nurmi, J., Ziegler, A. G., Knip, M., Simell, O., Veijola, R., Lövgren, T., Ilonen, J., Rewers, M., Barriga, K., Baxter, J., Deas, A., Eisenbarth, G., Emery, L., Gesualdo, P., Hoffman, M., Norris, J., Waugh, K., Weber, S., & 88 othersShe, J-X., Muir, A., Schatz, D., Hopkins, D., Steed, L., Choate, A., Silvis, K., Shankar, M., Huang, Y. H., Yang, P., Zheng, W. P., Wang, H. J., English, K., McIndoe, R. A., Bonifacio, E., Baumgarten, A., Hummel, S., Kersting, M., Koenig, S., Knopff, A., Locher, A., Roth, R., Schoen, S., Schwaiger, P., Sichert-Hellert, W., Winkler, C., Zimmermann, D., Nanto-Salonen, K., Simell, T., Uusitalo, U., Hyöty, H., Virtanen, S. M., Kronberg-Kippilä, C., Torma, M., Ruohonen, E., Romo, M., Mantymaki, E., Niininen, T., Nyblom, M., Stenius, A., Lernmark, Å., Almgren, P., Andrén-Aronsson, C., Andersson, E., Bianconi-Svensson, S., Carlsson, U. M., Cilio, C., Gerardsson, J., Gustavsson, B., Hansson, A., Hansson, G., Hansson, I., Ivarsson, S., Larsson, H., Karlsson, E., Katsarou, A., Lernmark, B., Massadakis, T., Nilsson, A., Järvirova, M. S., Sjöberg, B., Wallin, A., Wimar, Å., Hagopian, W. A., Brantley, M., Cowen, C., Hui, P., Hay, K. M., Jackson, M., Stepikova, V., Ugale, J., Krischer, J. P., Bray, C., Cuthbertson, D., Gowda, V., Hunt, K., Liu, S., Malloy, J., McCarthy, C., McLeod, W., Moyers, S., Nallamshetty, L., Smith, S., Akolkar, B., Briese, T., Erlich, H., Johnson, S. B. & Oberste, S., Oct 1 2007, In: Diabetes Technology and Therapeutics. 9, 5, p. 460-472 13 p.

    Research output: Contribution to journalArticlepeer-review

    53 Scopus citations
  • Erratum: Early pathogenic events associated with Sjögren's syndrome (SjS)-like disease of the nod mouse using microarray analysis (Laboratory Investigation (2006) 86 (1243-1260) DOI: 10.1038/labinvest.3700487)

    Killedar, S. J., Eckenrode, S. E., McIndoe, R. A., She, J-X., Nguyen, C. Q., Peck, A. B. & Cha, S., Apr 12 2007, In: Laboratory Investigation. 87, 4, p. 398 1 p.

    Research output: Contribution to journalComment/debatepeer-review

    1 Scopus citations