• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
1985 …2020

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  • 2020

    A big-data approach to understanding metabolic rate and response to obesity in laboratory mice

    Mouse Metabolic Phenotyping Center Energy Balance Working Group, May 2020, In : eLife. 9, p. 1-34 34 p., e53560.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • A combined risk score enhances prediction of type 1 diabetes among susceptible children

    Committees, Aug 1 2020, In : Nature Medicine. 26, 8, p. 1247-1255 9 p.

    Research output: Contribution to journalArticlepeer-review

  • 2019

    Metabolite-related dietary patterns and the development of islet autoimmunity

    The TEDDY study group, Dec 1 2019, In : Scientific reports. 9, 1, 14819.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    7 Scopus citations
  • The relationship between breastfeeding and reported respiratory and gastrointestinal infection rates in young children

    TEDDY study group, Sep 18 2019, In : BMC pediatrics. 19, 1, 339.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • 2018

    Cesarean Section on the Risk of Celiac Disease in the Offspring: The Teddy Study

    for the TEDDY Study Group, Mar 1 2018, In : Journal of Pediatric Gastroenterology and Nutrition. 66, 3, p. 417-424 8 p.

    Research output: Contribution to journalArticlepeer-review

    15 Scopus citations
  • Frequent HPV-independent p16/INK4A overexpression in head and neck cancer

    Lechner, M., Chakravarthy, A. R., Walter, V., Masterson, L., Feber, A., Jay, A., Weinberger, P. M., McIndoe, R. A., Forde, C. T., Chester, K., Kalavrezos, N., O'Flynn, P., Forster, M., Jones, T. M., Vaz, F. M., Hayes, D. N. & Fenton, T. R., Aug 2018, In : Oral Oncology. 83, p. 32-37 6 p.

    Research output: Contribution to journalArticlepeer-review

    16 Scopus citations
  • 2017

    Analgesic antipyretic use among young children in the TEDDY study: No association with islet autoimmunity

    for the TEDDY Study Group, May 16 2017, In : BMC pediatrics. 17, 1, 127.

    Research output: Contribution to journalArticlepeer-review

    8 Scopus citations
  • Association between early-life antibiotic use and the risk of islet or celiac disease autoimmunity

    Kemppainen, K. M., Vehik, K., Lynch, K. F., Larsson, H. E., Canepa, R. J., Simell, V., Koletzko, S., Liu, E., Simell, O. G., Toppari, J., Ziegler, A. G., Rewers, M. J., Lernmark, Å., Hagopian, W. A., She, J-X., Akolkar, B., Schatz, D. A., Atkinson, M. A., Blaser, M. J., Krischer, J. P. & 185 others, Hyöty, H., Agardh, D., Triplett, E. W., Bautista, K., Baxter, J., Bedoy, R., Felipe-Morales, D., Driscoll, K., Frohnert, B. I., Gesualdo, P., Hoffman, M., Karban, R., Norris, J., Samper-Imaz, A., Steck, A., Waugh, K., Wright, H., Adamsson, A., Ahonen, S., Ilonen, J., Jokipuu, S., Kallio, T., Karlsson, L., Kähönen, M., Knip, M., Kovanen, L., Koreasalo, M., Kurppa, K., Latva-Aho, T., Lönnrot, M., Mäntymäki, E., Multasuo, K., Mykkänen, J., Niininen, T., Niinistö, S., Nyblom, M., Rajala, P., Rautanen, J., Riikonen, A., Riikonen, M., Rouhiainen, J., Romo, M., Simell, T., Sjöberg, M., Stenius, A., Leppänen, M., Vainionpää, S., Varjonen, E., Veijola, R., Virtanen, S. M., Vähä-Mäkilä, M., Åkerlund, M., Lindfors, K., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Adams, J., Silvis, K., Haller, M., Gardiner, M., McIndoe, R. A., Sharma, A. K., William, J., Young, G., Anderson, S. W., Jacobsen, L., Beyerlein, A., Bonifacio, E., Hummel, M., Hummel, S., Foterek, K., Janz, N., Kersting, M., Knopff, A., Peplow, C., Roth, R., Scholz, M., Stock, J., Warncke, K., Wendel, L., Winkler, C., Aronsson, C. A., Ask, M., Bremer, J., Carlsson, U. M., Cilio, C., Ericson-Hallström, E., Fransson, L., Gard, T., Gerardsson, J., Bennet, R., Hansen, M., Hansson, G., Hyberg, S., Johansen, F., Jonsdottir, B., Lindström, M., Lundgren, M., Månsson-Martinez, M., Markan, M., Melin, J., Mestan, Z., Ottosson, K., Rahmati, K., Ramelius, A., Salami, F., Sibthorpe, S., Sjöberg, B., Swartling, U., Amboh, E. T., Törn, C., Wallin, A., Wimar, Å., Åberg, S., Killian, M., Crouch, C. C., Skidmore, J., Carson, J., Dalzell, M., Dunson, K., Hervey, R., Johnson, C., Lyons, R., Meyer, A., Mulenga, D., Tarr, A., Uland, M., Willis, J., Becker, D., Franciscus, M., Smith, M. E. D. E., Daftary, A., Klein, M. B., Yates, C., Abbondondolo, M., Austin-Gonzalez, S., Avendano, M., Baethke, S., Brown, R., Burkhardt, B., Butterworth, M., Clasen, J., Cuthbertson, D., Eberhard, C., Fiske, S., Garcia, D., Garmeson, J., Gowda, V., Heyman, K., Laras, F. P., Lee, H. S., Liu, S., Liu, X., Lynch, K., Malloy, J., McCarthy, C., Meulemans, S., Parikh, H., Shaffer, C., Smith, L., Smith, S., Sulman, N., Tamura, R., Uusitalo, U., Vijayakandipan, P., Wood, K., Yang, J., Ballard, L., Hadley, D., McLeod, W., Bourcier, K., Briese, T., Johnson, S. B., Yu, L., Miao, D., Bingley, P., William's, A., Chandler, K., Rokni, S., Willia, C., Wyatt, R., George, G., Grace, S. & Mulholland, N., Dec 2017, In : JAMA Pediatrics. 171, 12, p. 1217-1225 9 p.

    Research output: Contribution to journalArticlepeer-review

    34 Scopus citations
  • Joint modeling of longitudinal autoantibody patterns and progression to type 1 diabetes: results from the TEDDY study

    Ancillary Studies, Diet, Genetics, Human Subjects/Publicity/Publications, Immune Markers, Infectious Agents, Laboratory Implementation, Maternal Studies, Psychosocial, Quality Assurance, Steering, Study Coordinators, Celiac Disease, Clinical Implementation & TEDDY study group, Nov 1 2017, In : Acta Diabetologica. 54, 11, p. 1009-1017 9 p.

    Research output: Contribution to journalArticlepeer-review

    10 Scopus citations
  • Psychological manifestations of celiac disease autoimmunity in young children

    The TEDDY study group, Mar 2017, In : Pediatrics. 139, 3, e20162848.

    Research output: Contribution to journalArticlepeer-review

    18 Scopus citations
  • 2016

    A Comparison of Rule-based Analysis with Regression Methods in Understanding the Risk Factors for Study Withdrawal in a Pediatric Study

    TEDDY study group, Aug 26 2016, In : Scientific reports. 6, 30828.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • Association of Early Exposure of Probiotics and Islet Autoimmunity in the TEDDY Study

    Dietary Biomarkers Laboratory, Project Scientist, Other contributors, Autoantibody Reference Laboratories, Cortisol Laboratory, Data Coordinating Center, Pennsylvania Satellite Center, Washington Clinical Center, Sweden Clinical Center, Finland Clinical Center, Germany Clinical Center, Georgia/Florida Clinical Center, for the TEDDY Study Group, SNP Laboratory, RNA Laboratory and Gene Expression Laboratory, Microbiome and Viral Metagenomics Laboratory, Metabolomics Laboratory, HbA1c Laboratory, HLA Reference Laboratory, OGTT Laboratory & 2 others, Proteomics Laboratory & Repository, Jan 2016, In : JAMA Pediatrics. 170, 1, p. 20-28 9 p.

    Research output: Contribution to journalArticlepeer-review

    112 Scopus citations
  • 2015

    Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

    Onengut-Gumuscu, S., Chen, W. M., Burren, O., Cooper, N. J., Quinlan, A. R., Mychaleckyj, J. C., Farber, E., Bonnie, J. K., Szpak, M., Schofield, E., Achuthan, P., Guo, H., Fortune, M. D., Stevens, H., Walker, N. M., Ward, L. D., Kundaje, A., Kellis, M., Daly, M. J., Barrett, J. C. & 419 others, Cooper, J. D., Deloukas, P., Todd, J. A., Wallace, C., Concannon, P., Rich, S. S., Baskerville, T., Bautista, N., Bhatia, E., Bhatia, V., Hasan, K. B., Bonnici, F., Brodnicki, T., Browning, B., Cameron, F., Chaichanwatanakul, K., Cheung, P. T., Colman, P., Cotterill, A., Couper, J., Crock, P., Cutfield, R., Davis, T., Dixon, P., Donaghue, K., Dowling, K., Drury, P., Dye, S., Gellert, S., Ghani, R. A., Greer, R., Han, X., Harrison, L., Homatopoulos, N., Ji, L., Jones, T., Yin, L. K., Kamaruddin, N. A., Kanga, U., Kanungo, A., Kaur, G., Kek, B., Knowles, S., Krebs, J., Kumar, N., Lee, Y. J., Li, X., Liktimaskul, S., Lloyd, M., Loth, A., Louey, A., Mehra, N., Merriman, T., Min, L., Morahan, G., Moses, R., Mraz, G., Murphy, R., Nicholson, I., Panelo, A., Poh, P., Price, G., Ratnam, N., Sanjeevi, C., Sedimbi, S., Shen, S., Ying, G. S., Tait, B., Tandon, N., Thomas, A., Varney, M., Weerakulwattana, P., Willis, J., Akwo, E. A., Albret, L., Ampudia-Blasco, F., Argente, J., Avbelj, M., Babadjanova, G., Badenhoop, K., Battelino, T., Beilhack, G., Bergholdt, R., Bingley, P., Boehm, B., Bolidson, J., Brismar, K., Brorsson, C., Carlson, J., Castano, L., Chandler, K., Cherubini, V., Cinek, O., Cipponeri, E., Collado, R. C., de Leiva, A., Dzivite, I., Fagulha, A., Balcells, M. F., Cuartero, B. G., Lacalle, C. G., Guja, C., Gutiérrez, P., Hamou, A., Hatziagelaki, E., Heath, S., Heilman, K., Helmberg, W., Hermon, O., Hernandez, M., Holzheu, I., Hosszufalusi, N., Ilonen, J., Ionescu-Tirgoviste, C., Johannesen, J., Julier, C., Kahles, H., Kinalska, I., Knip, M., Kockum, I., Kojo, E., Kordonouri, O., Kretowski, A., Krikovszky, D., Kurkhaus, A., Kuzmicki, M., Lavant, E., Long, A., Ludvigsson, J., Madacsy, L., Maliszewska, K., Marga, M., Martinez, M. P., Mauricio, D., Mazurkievicz, G., Nerup, J., Norkus, A., Mogollon, F. J. N., Okruszko, A., Pettinari, C., Phillip, M., Pirags, V., Pociot, F., Pozzilli, P., Racasan, R., Raile, K., Rappner, R., Troyano, M. J. R., Roep, B. O., Rokni, S., Rosinger, S., Rubio-Cabezas, O., Ruckgaber, C., Satman, I., Schober, E., Seufert, J., Sing, R., Skrha, J., Sobngwi, E., Somerville, M., Spinas, G., Sumnik, Z., Tilmann, V., Undlien, D., Urbanavicius, V., der Auwera, B. V., San Miguel, F. V., Vazeo-Gerasimidi, A., Velickiene, D., Wägner, A., Walter, M., Williams, A., Ziegler, A., Agleham, M., Aldrich, A., Alemzadeh, R., Alper, C., Aly, T., Anastassiou, D., Arora, S., Austin, A., Becker, D., Benoist, C., Berka, N., Bhatia, S., Bonella, P., Bottini, N., Boyle, S., Braden, J., Brady, B., Brickman, W., Christensen, R., Couch, R., Counts, D., Crandall, J., Daniels, M., Dolan, L., Donaldson, D., Doria, A., Eisenbarth, G., Elder, J., El-Hajj, R., Erlich, H., Fain, P., Fear, A. L., Ferry, R., Fiallo-Scharer, R., Geraghty, D., Ghosh, S., Gitelman, S., Godwin, M., Goland, R., Goodman, N., Goodwin, G., Gravely, J., Greenbaum, C., Gudgeon, C., Gunville, F., Hagopian, W., Hakonarson, H., Hansen, J., Harrington, K., Hassing, J., Hilliker, W., Hoffman, R., Hulbert, E., Izquierdo, R., Jospe, N., Kaiserman, K., Kaufman, F., Kim, S., Kloos, E., Kosoy, R., Lane, J., Lane, J., Lawrence, J., Levetan, C., Levin, P., Lipton, R., Lonsdale, J., Magnuson, V., Marks, J., Mayer-Davis, B., McEvoy, R., McIndoe, R., Merkle, L., Metzger, D., Miao, D., Mickelson, E., Moonsamy, P., Moore, W., Moran, A., Noble, J., Olsem, G., Orban, T., Orlowski, C., Paterson, A., Pietropaolo, M., Pihoker, C., Polychronakos, C., Post, J., Postellon, D., Pugliese, A., Qu, H. Q., Quattrin, T., Rappaport, M., Raskin, P., Risbeck, H., Rodriguez, H., Rodriguez, L., Rogers, M., Rubalcava, L., Russell, B., Schatz, D., Scott, C., She, J. X., Shilling, H., Shulman, D., Soyka, L., Speiser, P., Starkman, H., Steck, A., Stender, S., Stratton, L., Sur, D., Taback, S., Thrailkill, K., Toth, E., Trymbiski, P., Tsalikian, E., Vertachnik, K., Wahlen, J., Wang, X., Weber, S., Wherrett, D., Willi, S., Wilson, D., Youkey, J., Young, N., Yu, L., Zhao, L. P., Zimmerman, D., Adlem, E., Allen, J., Brown, J., Clarke, P., Clayton, D., Coleman, G., Cucca, F., Davison, L., Downes, K., Duley, S., Dunger, D., Esposito, L., Everett, V., Field, S., Hafler, J., Hardy, M., Harrison, D., Harrison, I., Hawkins, S., Healy, B., Hood, S., Howell, S., Howson, J., Maisuria, M., Meadows, W., Mistry, T., Nezhenstsev, S., Nutland, S., Ovington, N., Plagnol, V., Rainbow, D., Rainbow, K., Raj, S., Schuilenburg, H., Simpson, A., Smink, L., Smyth, D., Taylor, N., Tuomilehto, J., Wicker, L., Widmer, B., Wilson, M., Withers, H., Yang, J., Brown, M., Crews, A., Griffin, J., Hall, M., Harnish, T., Hepler, J., Hilner, J., King, N., Lohman, K., Lu, L., Nail, J., Perdue, L., Pierce, J., Reboussin, D., Rushing, S., Sale, M., Sides, E., Snively, B., Teuschler, H., Theil, G., Wagenknecht, L., Williams, D., Akolkar, B., McKeon, C., Nierras, C., Thomson, E., Altshuler, D., Au, K., Bain, S., Barcellos, L., Barral, S., Becker, T., Briggs, F., Bronson, P., de Bakker, P., Devlin, B., Eike, M. C., Field, L., Gabriel, S., Garge, N., Gaudieri, S., Goldstein, B., Gorodezky, C., Hamon, S., He, C., Howson, J., Humphreys, K., James, I., Lathrop, M., Lie, B. A., Li, D., Mack, S., McGinnis, R., McKinnon, E., McLaren, W., Nolan, D., Olsson, M., Ott, J., Owerbach, D., Patterson, C., Podolsky, R., Ramsay, P., Rangantah, V., Risch, N., Ronningen, K. S., Shao, X., Single, R., Steffes, M., Thomson, G., Valdes, A. M., Vandiedonck, C., Whittaker, P. & Zhang, Q., Apr 28 2015, In : Nature Genetics. 47, 4, p. 381-386 6 p.

    Research output: Contribution to journalArticlepeer-review

    264 Scopus citations
  • Maternal anxiety about a child's diabetes risk in the TEDDY study: The potential role of life stress, postpartum depression, and risk perception

    TEDDY study group, Jun 1 2015, In : Pediatric Diabetes. 16, 4, p. 287-298 12 p.

    Research output: Contribution to journalArticlepeer-review

    12 Scopus citations
  • 2014

    Biomarker discovery study design for type 1 diabetes in The Environmental Determinants of Diabetes in the Young (TEDDY) study

    Lee, H. S., Burkhardt, B. R., Mcleod, W., Smith, S., Eberhard, C., Lynch, K., Hadley, D., Rewers, M., Simell, O., She, J. X., Hagopian, B., Lernmark, A., Akolkar, B., Ziegler, A. G., Krischer, J. P., Barriga, K., Bautista, K., Baxter, J., Eisenbarth, G., Frank, N. & 208 others, Gesualdo, P., Hoffman, M., Ide, L., Karban, R., Liu, E., Norris, J., Waugh, K., Samper-Imaz, A., Steck, A., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Silvis, K., Haller, M., Shankar, M., Sheehan, E., Gardiner, M., McIndoe, R., Liu, H., Nechtman, J., Sharma, A., Williams, J., Foghis, G., Anderson W., S. W., Beyerlein, A., Bonifacio, E., Hummel, M., Hummel, S., Foterek, K., Kersting, M., Knopff, A., Koletzko, S., Peplow, C., Roth, R., Schenke, J., Stock, J., Strauss, E., Warncke, K., Winkler, C., Simell G., O. G., Hyoty, H., Ilonen, J., Knip, M., Koivu, A., Koreasalo, M., Kahonen, M., Lonnrot, M., Multasuo, K., Mantymaki, E., Mykkanen, J., Nanto-Salonen, K., Niininen, T., Nyblom, M., Rautanen, J., Riikonen, A., Romo, M., Simell, A., Simell, B., Simell, T., Simell, V., Sjoberg, M., Stenius, A., Toppari, J., Varjonen, E., Veijola, R., Virtanen M., S. M., Akerlund, M., Agardh, D., Andrén-Aronsson, C., Ask, M., Bremer, J., Carlsson, U. M., Cilio, C., Ericson-Hallstrom, E., Fransson, L., Gard, T., Gerardsson, J., Hakansson, R., Hansen, M., Hansson, G., Hyberg, S., Johansen, F., Jonasdottir, B., Jonsson, L., Larsson, H., Lernmark, B., Mansson-Martinez, M., Markan, M., Massadakis, T., Melin, J., Mestan, Z., Nilsson, A., Nilsson, E., Rahmati, K., Rosenquist, A., Salami, F., Jarvirova, M. S., Sibthorpe, S., Sjoberg, B., Swartling, U., Trulsson, E., Torn, C., Wallin, A., Wimar, A., Aberg, S., Hagopian A., W. A., Yan, X., Killian, M., Crouch, C. C., Hay M., K. M., Ayres, S., Adams, C., Bratrude, B., Coughlin, D., Fowler, G., Franco, C., Hammar, C., Heaney, D., Marcus, P., Meyer, A., Mulenga, D., Scott, E., Skidmore, J., Stabbert, J., Stepitova, V., Williams, N., Becker, D., Franciscus, M., Dalmagro-Elias, M. E., Daftary, A., Klein, M. B., Abbondondolo, M., Austin-Gonzalez, S., Brown, R., Burkhardt, B., Butterworth, M., Cuthbertson, D., Eberhard, C., Fiske, S., Gowda, V., Lane, P., Liu, S., Liu, X., Malloy, J., McCarthy, C., McLeod, W., Smith, L., Tamura, R., Uusitalo, U., Vehik, K., Washington, E., Yang, J., Bourcier, K., Briese, T., Johnson, S. B., Oberste, S., Triplett, E., Yu, L., Miao, D., Bingley, P., Williams, A., Chandler, K., Rokni, S., Long, A., Boldison, J., Butterly, J., Broadhurst, J., Carreno, G., Curnock, R., Easton, P., Geoghan, I., Goode, J., Pearson, J., Reed, C., Ridewood, S., Wyatt, R., Eriksson, E. A., Karlsson, E. L., Erlund, I., Salminen, I., Sundvall, J., Leiviska, J., Lehtonen, M., Little R., R. R., Tennill L., A. L., Erlich, H., Bugawan, T., Alejandrino, M., Fiehn, O., Wikoff, B., Kind, T., Palazoglu, M., Wong, J., Wohlgemuth, G., Petrosino F., J. F., Marcovina M., S. M., Higgins, H., Ke, S., Zhao, Y., Jiang, N., Rich S., S. S., Chen, W. M., Onengut-Gumuscu, S., Farber, E., Pickin, R. R., Davis, J. & Gallo, D., Jul 2014, In : Diabetes/Metabolism Research and Reviews. 30, 5, p. 424-434 11 p.

    Research output: Contribution to journalArticlepeer-review

    19 Scopus citations
  • The same self-peptide selects conventional and regulatory CD4 + T cells with identical antigen receptors

    Wojciech, L., Ignatowicz, A., Seweryn, M., Rempala, G., Singh Pabla, S., McIndoe, R. A., Kisielow, P. & Ignatowicz, L., 2014, In : Nature communications. 5, 5061.

    Research output: Contribution to journalArticlepeer-review

    15 Scopus citations
  • 2013

    Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota

    Cebula, A., Seweryn, M., Rempala, G. A., Pabla, S. S., McIndoe, R. A., Denning, T. L., Bry, L., Kraj, P., Kisielow, P. & Ignatowicz, L., 2013, In : Nature. 497, 7448, p. 258-262 5 p.

    Research output: Contribution to journalArticlepeer-review

    215 Scopus citations
  • 2012

    Differences in recruitment and early retention among ethnic minority participants in a large pediatric cohort: The TEDDY Study

    Baxter, J., Vehik, K., Johnson, S. B., Lernmark, B., Roth, R., Simell, T., Rewers, M., Barriga, K., Bautista, K., Baxter, J., Eisenbarth, G., Frank, N., Gesualdo, P., Hoffman, M., Ide, L., Karban, R., Liu, E., Norris, J., Waugh, K., Samper-Imaz, A. & 149 others, Steck, A., She, J-X., Schatz, D., Hopkins, D., Steed, L., Thomas, J., Silvis, K., Haller, M., Shankar, M., English, K., McIndoe, R. A., Liu, H., Nechtman, J., Williams, J., Foghis, G., Stephen, W., Anderson, M. D., Ziegler, A. G., Achenbach, A., Boerschmann, H., Bonifacio, E., Bunk, M., Försch, J., Henneberger, L., Hummel, M., Hummel, S., Joslowski, G., Kersting, M., Knopff, A., Kocher, N., Koletzko, S., Krause, S., Mann, A., Matzke, C., Mittermeier, A., Peplow, C., Pflüger, M., Ramminger, C., Strauss, E., Rash-Sur, S., Roth, R., Schenkel, J., Stock, J., Voit, K., Winkler, C., Wosch, A., Zwilling, M., Simell, O. G., Nanto-Salonen, K., Ilonen, J., Knip, M., Tuula Simell, V., Hyöty, H., Virtanen, S. M., Kronberg-Kippilä, C., Sjöberg, M., Simell, B., Ruohonen, E., Romo, M., Mantymaki, E., Schroderus, H., Nyblom, M., Stenius, A., Lernmark, Å., Agardh, D., Almgren, P., Andersson, E., Andrén-Aronsson, C., Ask, M., Karlsson, U. M., Cilio, C., Bremer, J., Ericson-Hallström, E., Gard, T., Gerardsson, J., Hansson, G., Hansen, M., Hyberg, S., Håkansson, R., Johansen, F., Jonsson, L., Larsson, H., Lernmark, B., Markan, M., Massadakis, T., Melin, J., Månsson-Martinez, M., Nilsson, A., Rahmati, K., Järvirova, M. S., Sibthorpe, S., Sjöberg, B., Skogberg, A., Törn, C., Wallin, A., Wimar, Å., Åberg, S., Hagopian, W. A., Yan, X., Killian, M., Cowen Crouch, C., Hay, K. M., Ayres, S., Adams, C., Bratrude, B., Coughlin, D., Fowler, G., Franco, C., Hammar, C., Heaney, D., Marcus, P., Meyer, A., Mulenga, D., Scott, E., Skidmore, J., Stabbert, J., Stepitova, V., Williams, N., Becker, D., Franciscus, M., Dalmagro-Elias, M. E., Daftary, A., Krischer, J. P., Abbondondolo, M., Ballard, L., Brown, R., Burkhardt, B., Cuthbertson, D., Eberhard, C., Fiske, S., Gowda, V., Hadley, D., Lee, H. S., Liu, S., Lynch, K., Malloy, J., McCarthy, C., McLeod, W., Smith, L., Smith, S., Uusitalo, U., Vehik, K., Washington, E., Yang, J., Akolkar, B., Briese, T., Erlich, H., Johnson, S. B. & Oberste, S., Jul 2012, In : Contemporary Clinical Trials. 33, 4, p. 633-640 8 p.

    Research output: Contribution to journalArticlepeer-review

    25 Scopus citations
  • Research resource: DkCOIN, the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) Consortium Interconnectivity Network: A pilot program to aggregate research resources generated by multiple research consortia

    McKenna, N. J., Howard, C. L., Aufiero, M., Easton-Marks, J., Steffen, D. L., Becnel, L. B., Magnuson, M. A., McIndoe, R. A. & Cartailler, J. P., Oct 1 2012, In : Molecular Endocrinology. 26, 10, p. 1675-1681 7 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • 2011

    Gene expression profiling of early-phase Sjögren's syndrome in C57BL/6.NOD-Aec1Aec2 mice identifies focal adhesion maturation associated with infiltrating leukocytes

    Peck, A. B., Saylor, B. T., Nguyen, L., Sharma, A. K., She, J-X., Nguyen, C. Q. & McIndoe, R. A., Jul 2011, In : Investigative Ophthalmology and Visual Science. 52, 8, p. 5647-5655 9 p.

    Research output: Contribution to journalArticlepeer-review

    9 Scopus citations
  • 2010

    Designing and implementing sample and data collection for an international genetics study: The Type 1 Diabetes Genetics Consortium (T1DGC)

    the T1DGC, Aug 1 2010, In : Clinical Trials. 7, 1_suppl, p. S5-S32

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • Hepatic gene expression profiling reveals key pathways involved in leptin-mediated weight loss in ob/ob mice

    Sharma, A., Bartell, S. M., Baile, C. A., Chen, B., Podolsky, R. H., McIndoe, R. A. & She, J. X., 2010, In : PloS one. 5, 8, e12147.

    Research output: Contribution to journalArticlepeer-review

    20 Scopus citations
  • Para SAM: A parallelized version of the significance analysis of microarrays algorithm

    Sharma, A. K., Zhao, J., Podolsky, R. & McIndoe, R. A., Apr 15 2010, In : Bioinformatics. 26, 11, p. 1465-1467 3 p., btq161.

    Research output: Contribution to journalArticlepeer-review

    1 Scopus citations
  • 2009

    A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets

    Sharma, A., Podolsky, R., Zhao, J. & Mcindoe, R. A., 2009, In : Bioinformatics. 25, 9, p. 1152-1157 6 p.

    Research output: Contribution to journalArticlepeer-review

    14 Scopus citations
    28 Scopus citations
    26 Scopus citations
  • Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

    Barrett, J. C., Clayton, D. G., Concannon, P., Akolkar, B., Cooper, J. D., Erlich, H. A., Julier, C., Morahan, G., Nerup, J., Nierras, C., Plagnol, V., Pociot, F., Schuilenburg, H., Smyth, D. J., Stevens, H., Todd, J. A., Walker, N. M., Rich, S. S., Baskerville, T., Bautista, N. & 380 others, Bhatia, E., Bhatia, V., Bin Hasan, K., Bonnici, F., Brodnicki, T., Cameron, F., Chaichanwatanakul, K., Cheung, P. T., Colman, P., Cotterill, A., Couper, J., Cutfield, R., Davis, T., Dixon, P., Donaghue, K., Dowling, K., Drury, P., Dye, S., Gellert, S., Abdul Ghani, R., Greer, R., Han, X., Harrison, L., Homatopoulos, N., Ji, L., Jones, T., Yin, L. K., Kamaruddin, N. A., Kanga, U., Kanungo, A., Kaur, G., Kek, B., Knowles, S., Krebs, J., Kumar, N., Lee, Y. J., Li, X., Liktimaskul, S., Lloyd, M., Loth, A., Louey, A., Mehra, N., Merriman, T., Min, L., Morahan, G., Moses, R., Mraz, G., Murphy, R., Nicholson, I., Panelo, A., Poh, P., Price, G., Ratnam, N., Sanjeevi, C., Sedimbi, S., Shen, S., Ying, G. S., Tait, B., Tandon, N., Thomas, A., Varney, M., Weerakulwattana, P., Willis, J., Albret, L., Ampudia-Blasco, F., Argente, J., Babadjanova, G., Badenhoop, K., Battelino, T., Beilhack, G., Bergholdt, R., Bingley, P., Boehm, B., Bolidson, J., Brorsson, C., Carlson, J., Castano, L., Chandler, K., Cinek, O., Cipponeri, E., Corripio, R., Garcia Cuartero, B., de Leiva, A., Fagulha, A., Fernandez Balcells, M., Guja, C., Gutierrez, P., Hatziagelaki, E., Heath, S., Helmberg, W., Hernandez, M., Holzheu, I., Hosszufalusi, N., Ionescu-Tirgoviste, C., Johannesen, J., Julier, C., Kahles, H., Knip, M., Kockum, I., Kojo, E., Koprivarova, K., Kordonouri, O., Kretowski, A., Krikovszky, D., Kurkhaus, A., Lalic, N., Lavant, E., Long, A., Ludvigsson, J., Madacsy, L., Marga, M., Mauricio, D., Mazurkievicz, G., Nerup, J., Novoa Mogollon, F. J., Petersen, M. T., Phillip, M., Pirags, V., Pociot, F., Pozzilli, P., Rappner, R., Roep, B., Rokni, S., Rosinger, S., Rubio-Cabezas, O., Ruckgaber, C., Satman, I., Schober, E., Seufert, J., Sing, R., Skrha, J., Sobngwi, E., Somerville, M., Spinas, G., Tilmann, V., Undlien, D., Urbanavicius, V., Van der Auwera, B., Vasquez San Miguel, F., Vazeo-Gerasimidi, A., Velickiene, D., Wagner, A., Williams, A., Wurzburger, M., Ziegler, A., Agleham, M., Aldrich, A., Alemzadeh, R., Aly, T., Arora, S., Austin, A., Becker, D., Benoist, C., Berka, N., Bhatia, S., Bonella, P., Bottini, N., Boyle, S., Brady, B., Brickman, W., Christensen, R., Concannon, P., Couch, R., Counts, D., Crandall, J., Daniels, M., Dolan, L., Donaldson, D., Doria, A., Eisenbarth, G., El-Hajj, R., Erlich, H., Fain, P., Fear, A. L., Ferry, R., Fiallo-Scharer, R., Ghosh, S., Gitelman, S., Godwin, M., Goland, R., Goodman, N., Goodwin, G., Gravely, J., Greenbaum, C., Gudgeon, C., Gunville, F., Hagopian, W., Hakonarson, H., Hansen, J., Harrington, K., Hassing, J., Hilliker, W., Hoffman, R., Hulbert, E., Izquierdo, R., Jospe, N., Kaiserman, K., Kaufman, F., Kim, S., Kloos, E., Kosoy, R., Lane, J., Lane, J., Lawrence, J., Levetan, C., Levin, P., Lipton, R., Lonsdale, J., Magnuson, V., Marks, J., Mayer-Davis, B., McEvoy, R., McIndoe, R. A., Merkle, L., Metzger, D., Miao, D., Mickelson, E., Moonsamy, P., Moore, W., Moran, A., Noble, J., Olsem, G., Onengut-Gumuscu, S., Orban, T., Orlowski, C., Paterson, A., Pietropaolo, M., Pihoker, C., Polychronakos, C., Post, J., Postellon, D., Pugliese, A., Qu, H., Quattrin, T., Rappaport, M., Raskin, P., Risbeck, H., Rodriguez, H., Rodriguez, L., Rogers, M., Russell, B., Schatz, D., Scott, C., She, J-X., Shulman, D., Soyka, L., Speiser, P., Starkman, H., Steck, A., Stender, S., Stratton, L., Sur, D., Taback, S., Thrailkill, K., Toth, E., Trymbiski, P., Tsalikian, E., Vertachnik, K., Wahlen, J., Wang, X., Weber, S., Wherrett, D., Willi, S., Wilson, D., Youkey, J., Young, N., Yu, L., Zimmerman, D., Adlem, E., Allen, J., Brown, J., Burren, O., Clarke, P., Clayton, D., Coleman, G., Cooper, J., Cucca, F., Duley, S., Dunger, D., Everett, V., Hardy, M., Harrison, D., Harrison, I., Hawkins, S., Healy, B., Hood, S., Howell, S., Maisuria, M., Meadows, W., Mistry, T., Nutland, S., Ovington, N., Schuilenburg, H., Simpson, A., Smink, L., Stevens, H., Taylor, N., Todd, J., Tuomilehto, J., Walker, N., Widmer, B., Wilson, M., Withers, H., Brown, M., Chen, W. M., Crews, A., Griffin, J., Hall, M., Harnish, T., Hepler, J., Hilner, J., King, N., Lohman, K., Lu, L., Mychaleckyj, J., Nail, J., Perdue, L., Pierce, J., Reboussin, D., Rich, S., Rushing, S., Sale, M., Sides, E., Snively, B., Teuschler, H., Theil, G., Williams, D., Akolkar, B., McKeon, C., Nierras, C., Thomson, E., Altshuler, D., Au, K., Bain, S., Barcellos, L., Barral, S., Becker, T., Briggs, F., Bronson, P., Daly, M., de Bakker, P., Deloukas, P., Devlin, B., Eike, M. C., Field, L., Gabriel, S., Garge, N., Gaudieri, S., Goldstein, B., Gorodezky, C., Hamon, S., He, C., Howson, J., Humphreys, K., James, I., Lathrop, M., Lie, B. A., Li, D., Mack, S., McGinnis, R., McKinnon, E., McLaren, W., Nolan, D., Olsson, M., Ott, J., Owerbach, D., Patterson, C., Podolsky, R., Ramsay, P., Rangantah, V., Risch, N., Ronningen, K. S., Shao, X., Single, R., Steffes, M., Thomson, G., Valdes, A. M., Vandiedonck, C., Whittaker, P. & Zhang, Q., Jun 1 2009, In : Nature Genetics. 41, 6, p. 703-707 5 p.

    Research output: Contribution to journalArticlepeer-review

    1133 Scopus citations
  • 2008

    ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use

    Kraj, P., Sharma, A., Garge, N., Podolsky, R. & McIndoe, R. A., Apr 16 2008, In : BMC Bioinformatics. 9, 200.

    Research output: Contribution to journalArticlepeer-review

    21 Scopus citations
  • The IL-10 and IFN-γ pathways are essential to the potent immunosuppressive activity of cultured CD8+ NKT-like cells

    Zhou, L., Wang, H., Zhong, X., Jin, Y., Mi, Q. S., Sharma, A. K., McIndoe, R. A., Garge, N., Podolsky, R. & She, J-X., Jul 29 2008, In : Genome Biology. 9, 7, R119.

    Research output: Contribution to journalArticlepeer-review

    11 Scopus citations
  • 2007

    A high-throughput population screening system for the estimation of genetic risk for type 1 diabetes: An application for the TEDDY (The Environmental Determinants of Diabetes in the Young) study

    Kiviniemi, M., Hermann, R., Nurmi, J., Ziegler, A. G., Knip, M., Simell, O., Veijola, R., Lövgren, T., Ilonen, J., Rewers, M., Barriga, K., Baxter, J., Deas, A., Eisenbarth, G., Emery, L., Gesualdo, P., Hoffman, M., Norris, J., Waugh, K., Weber, S. & 88 others, She, J-X., Muir, A., Schatz, D., Hopkins, D., Steed, L., Choate, A., Silvis, K., Shankar, M., Huang, Y. H., Yang, P., Zheng, W. P., Wang, H. J., English, K., McIndoe, R. A., Bonifacio, E., Baumgarten, A., Hummel, S., Kersting, M., Koenig, S., Knopff, A., Locher, A., Roth, R., Schoen, S., Schwaiger, P., Sichert-Hellert, W., Winkler, C., Zimmermann, D., Nanto-Salonen, K., Simell, T., Uusitalo, U., Hyöty, H., Virtanen, S. M., Kronberg-Kippilä, C., Torma, M., Ruohonen, E., Romo, M., Mantymaki, E., Niininen, T., Nyblom, M., Stenius, A., Lernmark, Å., Almgren, P., Andrén-Aronsson, C., Andersson, E., Bianconi-Svensson, S., Carlsson, U. M., Cilio, C., Gerardsson, J., Gustavsson, B., Hansson, A., Hansson, G., Hansson, I., Ivarsson, S., Larsson, H., Karlsson, E., Katsarou, A., Lernmark, B., Massadakis, T., Nilsson, A., Järvirova, M. S., Sjöberg, B., Wallin, A., Wimar, Å., Hagopian, W. A., Brantley, M., Cowen, C., Hui, P., Hay, K. M., Jackson, M., Stepikova, V., Ugale, J., Krischer, J. P., Bray, C., Cuthbertson, D., Gowda, V., Hunt, K., Liu, S., Malloy, J., McCarthy, C., McLeod, W., Moyers, S., Nallamshetty, L., Smith, S., Akolkar, B., Briese, T., Erlich, H., Johnson, S. B. & Oberste, S., Oct 1 2007, In : Diabetes Technology and Therapeutics. 9, 5, p. 460-472 13 p.

    Research output: Contribution to journalArticlepeer-review

    44 Scopus citations
  • The Environmental Determinants of Diabetes in the Young (TEDDY) study: Study design

    Krischer, J., Rewers, M., Barriga, K., Baxter, J., Deas, A., Eisenbarth, G., Emery, L., Gesualdo, P., Hoffman, M., Norris, J., Waugh, K., Weber, S., She, J-X., Muir, A., Schatz, D., Hopkins, D., Steed, L., Silvis, K., Shankar, M., huang, Y. H. & 84 others, Yang, P., Zheng, W. P., Wang, H. J., English, K., McIndoe, R. A., Ziegler, A. G., Bonifacio, E., Baumgarten, A., Hummel, S., Kersting, M., Koenig, S., Knopff, A., Locher, A., Roth, R., Schoen, S., Schwaiger, P., Sichert-Hellert, W., Winkler, C., Zimmermann, D., Simell, O. G., Nanto-Salonen, K., Ilonen, J., Knip, M., Veijola, R., Simell, T., Uusitalo, U., Hyöty, H., Virtanen, S. M., Kronberg-Kippila̧, C., Torma, M., Ruohonen, E., Romo, M., Mantymaki, E., Niininen, T., Nyblom, M., Stenius, A., Lernmark, Å., Almgren, P., Andrén-Aronsson, C., Andersson, E., Bianconi-Svensson, S., Carlsson, U. M., Cilio, C., Gerardsson, J., Gustavsson, B., Hansson, A., Hansson, G., Hansson, I., Ivarsson, S., Larsson, H., Karlsson, E., Katsarou, A., Lernmark, B., Massadakis, T., Nilsson, A., Järvirova, M. S., Sjöberg, B., Wallin, A., Wimar, Å., Hagopian, W. A., Brantley, M., Cowen, C., Hui, P., Hay, K. M., Jackson, M., Stepikova, V., Ugale, J., Krischer, J. P., Bray, C., Cuthbertson, D., Gowda, V., Hunt, K., Liu, S., Malloy, J., McCarthy, C., McLeod, W., Moyers, S., Nallamshetty, L., Smith, S., Akolkar, B., Briese, T., Erlich, H., Bennett Johnson, S. & Oberste, S., Oct 2007, In : Pediatric Diabetes. 8, 5, p. 286-298 13 p.

    Research output: Contribution to journalArticlepeer-review

    184 Scopus citations
  • 2006

    Early pathogenic events associated with Sjögren's syndrome (SjS)-like disease of the nod mouse using microarray analysis

    Killedar, S. Y., Eckenrode, S. E., McIndoe, R. A., She, J. X., Nguyen, C. Q., Peck, A. B. & Cha, S. R., Dec 2 2006, In : Laboratory Investigation. 86, 12, p. 1243-1260 18 p.

    Research output: Contribution to journalArticlepeer-review

    47 Scopus citations
  • Intergeneration CAG expansion and contraction in a Chinese HD family

    Tang, Y., Wang, Y., Yang, P., Liu, Y., Wang, B., Podolsky, R., McIndoe, R. A. & Wang, C. Y., Apr 5 2006, In : American Journal of Medical Genetics - Neuropsychiatric Genetics. 141 B, 3, p. 242-244 3 p.

    Research output: Contribution to journalArticlepeer-review

    11 Scopus citations
  • The application of genomic and proteomic technologies in predictive, preventive and personalized medicine

    Collins, C. D., Purohit, S., Podolsky, R. H., Zhao, H. S., Schatz, D., Eckenrode, S. E., Yang, P., Hopkins, D., Muir, A., Hoffman, M., McIndoe, R. A., Rewers, M. & She, J. X., Nov 2006, In : Vascular Pharmacology. 45, 5, p. 258-267 10 p.

    Research output: Contribution to journalArticlepeer-review

    47 Scopus citations
  • 2005

    Alterations of renal phenotype and gene expression profiles due to protein overload in NOD-related mouse strains

    Wilson, K. H. S., McIndoe, R. A., Eckenrode, S., Morel, L., Agarwal, A., Croker, B. P. & She, J. X., Dec 21 2005, In : BMC Nephrology. 6, 17.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • caBIONet - A .NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases

    Kraj, P. & McIndoe, R. A., Aug 15 2005, In : Bioinformatics. 21, 16, p. 3456-3458 3 p.

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • 2004

    Gene Expression Profiles Define a Key Checkpoint for Type 1 Diabetes in NOD Mice

    Eckenrode, S. E., Ruan, Q., Yang, P., Zheng, W., McIndoe, R. A. & She, J-X., Feb 2004, In : Diabetes. 53, 2, p. 366-375 10 p.

    Research output: Contribution to journalArticlepeer-review

    27 Scopus citations
  • Microarray experimental design: Power and sample size considerations

    Yang, M. C. K., Yang, J. J., McIndoe, R. A. & She, J. X., Apr 2004, In : Physiological Genomics. 16, p. 24-28 5 p.

    Research output: Contribution to journalArticlepeer-review

    40 Scopus citations
  • Molecular pathways altered by insulin B9-23 immunization

    Eckenrode, S. E., Ruan, Q. G., Collins, C. D., Yang, P., McIndoe, R. A., Muir, A. & She, J-X., 2004, In : Annals of the New York Academy of Sciences. 1037, p. 175-185 11 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • 2003

    Gene expression associated with interferon alfa antiviral activity in an HCV replicon cell line

    Zhu, H., Zhao, H., Collins, C. D., Eckenrode, S. E., Run, Q., McIndoe, R. A., Crawford, J. M., Nelson, D. R., She, J. X. & Liu, C., May 1 2003, In : Hepatology. 37, 5, p. 1180-1188 9 p.

    Research output: Contribution to journalArticlepeer-review

    95 Scopus citations
  • Gene expression profiling during all-trans retinoic acid-induced cell differentiation of acute promyelocytic leukemia cells

    Yang, L., Zhao, H., Li, S. W., Ahrens, K., Collins, C., Eckenrode, S., Ruan, Q. G., McIndoe, R. A. & She, J-X., Nov 2003, In : Journal of Molecular Diagnostics. 5, 4, p. 212-221 10 p.

    Research output: Contribution to journalArticlepeer-review

    26 Scopus citations
  • MADGE: Scalable distributed data management software for cDNA microarrays

    McIndoe, R. A., Lanzen, A. & Hurtz, K., Jan 1 2003, In : Bioinformatics. 19, 1, p. 87-89 3 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice

    Wilson, K. H. S., Eckenrode, S. E., Li, Q. Z., Ruan, Q. G., Yang, P., Shi, J. D., Davoodi-Semiromi, A., McIndoe, R. A., Croker, B. P. & She, J-X., Aug 1 2003, In : Diabetes. 52, 8, p. 2151-2159 9 p.

    Research output: Contribution to journalArticlepeer-review

    53 Scopus citations
  • 2001

    A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays.

    Yang, M. C., Ruan, Q. G., Yang, J. J., Eckenrode, S., Wu, S., McIndoe, R. A. & She, J. X., Oct 10 2001, In : Physiological Genomics. 7, 1, p. 45-53 9 p.

    Research output: Contribution to journalArticlepeer-review

    95 Scopus citations
  • Rapid decrease of RNA level of a novel mouse mitochondria solute carrier protein (Mscp) gene at 4-5 weeks of age

    Li, Q. Z., Eckenrode, S., Ruan, Q. G., Wang, C. Y., Shi, J. D., McIndoe, R. A. & She, J-X., 2001, In : Mammalian Genome. 12, 11, p. 830-836 7 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • 2000

    Linkage analysis of 150 high-risk prostate cancer families at 1q24-25

    Goode, E. L., Stanford, J. L., Chakrabarti, L., Gibbs, M., Kolb, S., McIndoe, R. A., Buckley, V. A., Schuster, E. F., Neal, C. L., Miller, E. L., Brandzel, S., Hood, L., Ostrander, E. A. & Jarvik, G. P., Mar 2000, In : Genetic Epidemiology. 18, 3, p. 251-275 25 p.

    Research output: Contribution to journalArticlepeer-review

    41 Scopus citations
  • WECHE: A novel hematopoietic regulatory factor

    Ohneda, O., Ohneda, K., Nomiyama, H., Zheng, Z., Gold, S. A., Arai, F., Miyamoto, T., Taillon, B. E., McIndoe, R. A., Shimkets, R. A., Lewin, D. A., Suda, T. & Lasky, L. A., Feb 1 2000, In : Immunity. 12, 2, p. 141-150 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    29 Scopus citations
  • 1999

    Evidence for a rare prostate cancer-susceptibility locus at chromosome 1p36

    Gibbs, M., Stanford, J. L., McIndoe, R. A., Jarvik, G. P., Kolb, S., Goode, E. L., Chakrabarti, L., Schuster, E. F., Buckley, V. A., Miller, E. L., Brandzel, S., Li, S., Hood, L. & Ostrander, E. A., 1999, In : American journal of human genetics. 64, 3, p. 776-787 12 p.

    Research output: Contribution to journalArticlepeer-review

    274 Scopus citations
  • Localization of non-Mhc collagen-induced arthritis susceptibility loci in DBA/1j mice

    Mcindoe, R. A., Bohlman, B., Chi, E., Schuster, E., Lindhardt, M. & Hood, L., Mar 2 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 5, p. 2210-2214 5 p.

    Research output: Contribution to journalArticlepeer-review

    68 Scopus citations
  • 1997

    Data-adaptive algorithms for calling alleles in repeat polymorphisms

    Stoughton, R., Bumgarner, R., Frederick, W. J. & McIndoe, R. A., Jan 1 1997, In : ELECTROPHORESIS. 18, 1, p. 1-5 5 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations