A software package for next-gen bisulfite sequencing data analysis

Jeong-Hyeon Choi, Dong Sung Ryu, Suhas Sureshchandra, Huidong Shi, Hwan Gue Cho

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Bisulfite sequencing (BS-seq) is one of the most important sequencing protocols for genome-wide DNA methylation studies. However, it causes significant challenges in computation because it converts unmethylated cytosines to thymines. This paper presents a software package to address those challenges and to provide various kinds of analysis modules, from mapping to comparing multiple samples.

Original languageEnglish (US)
Title of host publication2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011
Pages1061-1062
Number of pages2
DOIs
StatePublished - Dec 1 2011
Event2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011 - Atlanta, GA, United States
Duration: Nov 12 2011Nov 15 2011

Publication series

Name2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011

Other

Other2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011
CountryUnited States
CityAtlanta, GA
Period11/12/1111/15/11

Fingerprint

Thymine
Cytosine
DNA Methylation
Software packages
Software
Genes
Genome
Network protocols
hydrogen sulfite

Keywords

  • DNA methylation
  • bisulfite sequencing
  • next-gen sequencing

ASJC Scopus subject areas

  • Biomedical Engineering
  • Health Informatics
  • Health Information Management

Cite this

Choi, J-H., Ryu, D. S., Sureshchandra, S., Shi, H., & Cho, H. G. (2011). A software package for next-gen bisulfite sequencing data analysis. In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011 (pp. 1061-1062). [6112561] (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011). https://doi.org/10.1109/BIBMW.2011.6112561

A software package for next-gen bisulfite sequencing data analysis. / Choi, Jeong-Hyeon; Ryu, Dong Sung; Sureshchandra, Suhas; Shi, Huidong; Cho, Hwan Gue.

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. p. 1061-1062 6112561 (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Choi, J-H, Ryu, DS, Sureshchandra, S, Shi, H & Cho, HG 2011, A software package for next-gen bisulfite sequencing data analysis. in 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011., 6112561, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011, pp. 1061-1062, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011, Atlanta, GA, United States, 11/12/11. https://doi.org/10.1109/BIBMW.2011.6112561
Choi J-H, Ryu DS, Sureshchandra S, Shi H, Cho HG. A software package for next-gen bisulfite sequencing data analysis. In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. p. 1061-1062. 6112561. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011). https://doi.org/10.1109/BIBMW.2011.6112561
Choi, Jeong-Hyeon ; Ryu, Dong Sung ; Sureshchandra, Suhas ; Shi, Huidong ; Cho, Hwan Gue. / A software package for next-gen bisulfite sequencing data analysis. 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. pp. 1061-1062 (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).
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