Association between genetic variants in DNA and histone methylation and telomere length

Sangmi Kim, Christine G. Parks, Zongli Xu, Gleta Carswell, Lisa A. DeRoo, Dale P. Sandler, Jack A. Taylor

Research output: Contribution to journalArticle

20 Citations (Scopus)

Abstract

Telomere length, a biomarker of aging and age-related diseases, exhibits wide variation between individuals. Common genetic variation may explain some of the individual differences in telomere length. To date, however, only a few genetic variants have been identified in the previous genome-wide association studies. As emerging data suggest epigenetic regulation of telomere length, we investigated 72 single nucleotide polymorphisms (SNPs) in 46 genes that involve DNA and histone methylation as well as telomerase and telomere-binding proteins and DNA damage response. Genotyping and quantification of telomere length were performed in blood samples from 989 non-Hispanic white participants of the Sister Study, a prospective cohort of women aged 35-74 years. The association of each SNP with logarithmically-transformed relative telomere length was estimated using multivariate linear regression. Six SNPs were associated with relative telomere length in blood cells with p-values<0.05 (uncorrected for multiple comparisons). The minor alleles of BHMT rs3733890 G>A (p = 0.041), MTRR rs2966952 C>T (p = 0.002) and EHMT2 rs558702 G>A (p = 0.008) were associated with shorter telomeres, while minor alleles of ATM rs1801516 G>A (p = 0.031), MTR rs1805087 A>G (p = 0.038) and PRMT8 rs12299470 G>A (p = 0.019) were associated with longer telomeres. Five of these SNPs are located in genes coding for proteins involved in DNA and histone methylation. Our results are consistent with recent findings that chromatin structure is epigenetically regulated and may influence the genomic integrity of telomeric region and telomere length maintenance. Larger studies with greater coverage of the genes implicated in DNA methylation and histone modifications are warranted to replicate these findings.

Original languageEnglish (US)
Article numbere40504
JournalPLoS One
Volume7
Issue number7
DOIs
StatePublished - Jul 11 2012

Fingerprint

Methylation
telomeres
Telomere
DNA Methylation
Polymorphism
histones
methylation
Histones
Nucleotides
Genes
DNA
Single Nucleotide Polymorphism
Blood
Telomere-Binding Proteins
single nucleotide polymorphism
Association reactions
Telomerase
Automatic teller machines
Biomarkers
Linear regression

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Kim, S., Parks, C. G., Xu, Z., Carswell, G., DeRoo, L. A., Sandler, D. P., & Taylor, J. A. (2012). Association between genetic variants in DNA and histone methylation and telomere length. PLoS One, 7(7), [e40504]. https://doi.org/10.1371/journal.pone.0040504

Association between genetic variants in DNA and histone methylation and telomere length. / Kim, Sangmi; Parks, Christine G.; Xu, Zongli; Carswell, Gleta; DeRoo, Lisa A.; Sandler, Dale P.; Taylor, Jack A.

In: PLoS One, Vol. 7, No. 7, e40504, 11.07.2012.

Research output: Contribution to journalArticle

Kim, S, Parks, CG, Xu, Z, Carswell, G, DeRoo, LA, Sandler, DP & Taylor, JA 2012, 'Association between genetic variants in DNA and histone methylation and telomere length', PLoS One, vol. 7, no. 7, e40504. https://doi.org/10.1371/journal.pone.0040504
Kim S, Parks CG, Xu Z, Carswell G, DeRoo LA, Sandler DP et al. Association between genetic variants in DNA and histone methylation and telomere length. PLoS One. 2012 Jul 11;7(7). e40504. https://doi.org/10.1371/journal.pone.0040504
Kim, Sangmi ; Parks, Christine G. ; Xu, Zongli ; Carswell, Gleta ; DeRoo, Lisa A. ; Sandler, Dale P. ; Taylor, Jack A. / Association between genetic variants in DNA and histone methylation and telomere length. In: PLoS One. 2012 ; Vol. 7, No. 7.
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