Abstract
Urofacial (Ochoa) syndrome is an autosomal recessive disease characterized by distorted facial expression and urinary abnormalities. Previously, we mapped the UFS gene to chromosome 10q23-q24 and narrowed the interval to one YAC clone of 1410 kb. Here, we have constructed a BAC/PAC contig of the 1-Mb region using STS content mapping with 42 BAC/PAC-end sequences, 9 previously reported and 16 newly identified microsatellite markers, and 14 EST markers. A total of 26 polymorphic microsatellite markers were genotyped for 31 UFS patients from Colombia and 2 patients from the United States. Haplotype analyses suggest that the UFS gene is located within two overlapping BAC clones, a region of <360 kb of DNA sequence. We tested 42 EST markers previously mapped to the D10S1709-D10S603 interval against the BAC/PAC contig and identified 11 ESTs located in the 1-Mb region. Four of the 11 ESTs mapped to the 360-kb UFS critical region. Shotgun sequencing of the two BAC clones and BLASTN search of the E ST databases revealed 3 other ESTs contained in the UFS critical region. These results will facilitate the cloning and identification of the UFS gene.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 12-19 |
| Number of pages | 8 |
| Journal | Genomics |
| Volume | 60 |
| Issue number | 1 |
| DOIs | |
| State | Published - Aug 15 1999 |
| Externally published | Yes |
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ASJC Scopus subject areas
- Genetics
Cite this
Construction of a physical and transcript map for a 1-Mb genomic region containing the urofacial (Ochoa) syndrome gene on 10q23-q24 and localization of the disease gene within two overlapping BAC clones (<360 kb). / Wang, Cong Yi; Shi, Jing Da; Huang, Yi Qun; Cruz, Pedro E.; Ochoa, Bernardo; Lee, Bobbilynn Hawkins; Davoodi-Semiromi, Abdoreza; She, Jin-Xiong.
In: Genomics, Vol. 60, No. 1, 15.08.1999, p. 12-19.Research output: Contribution to journal › Article
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TY - JOUR
T1 - Construction of a physical and transcript map for a 1-Mb genomic region containing the urofacial (Ochoa) syndrome gene on 10q23-q24 and localization of the disease gene within two overlapping BAC clones (<360 kb)
AU - Wang, Cong Yi
AU - Shi, Jing Da
AU - Huang, Yi Qun
AU - Cruz, Pedro E.
AU - Ochoa, Bernardo
AU - Lee, Bobbilynn Hawkins
AU - Davoodi-Semiromi, Abdoreza
AU - She, Jin-Xiong
PY - 1999/8/15
Y1 - 1999/8/15
N2 - Urofacial (Ochoa) syndrome is an autosomal recessive disease characterized by distorted facial expression and urinary abnormalities. Previously, we mapped the UFS gene to chromosome 10q23-q24 and narrowed the interval to one YAC clone of 1410 kb. Here, we have constructed a BAC/PAC contig of the 1-Mb region using STS content mapping with 42 BAC/PAC-end sequences, 9 previously reported and 16 newly identified microsatellite markers, and 14 EST markers. A total of 26 polymorphic microsatellite markers were genotyped for 31 UFS patients from Colombia and 2 patients from the United States. Haplotype analyses suggest that the UFS gene is located within two overlapping BAC clones, a region of <360 kb of DNA sequence. We tested 42 EST markers previously mapped to the D10S1709-D10S603 interval against the BAC/PAC contig and identified 11 ESTs located in the 1-Mb region. Four of the 11 ESTs mapped to the 360-kb UFS critical region. Shotgun sequencing of the two BAC clones and BLASTN search of the E ST databases revealed 3 other ESTs contained in the UFS critical region. These results will facilitate the cloning and identification of the UFS gene.
AB - Urofacial (Ochoa) syndrome is an autosomal recessive disease characterized by distorted facial expression and urinary abnormalities. Previously, we mapped the UFS gene to chromosome 10q23-q24 and narrowed the interval to one YAC clone of 1410 kb. Here, we have constructed a BAC/PAC contig of the 1-Mb region using STS content mapping with 42 BAC/PAC-end sequences, 9 previously reported and 16 newly identified microsatellite markers, and 14 EST markers. A total of 26 polymorphic microsatellite markers were genotyped for 31 UFS patients from Colombia and 2 patients from the United States. Haplotype analyses suggest that the UFS gene is located within two overlapping BAC clones, a region of <360 kb of DNA sequence. We tested 42 EST markers previously mapped to the D10S1709-D10S603 interval against the BAC/PAC contig and identified 11 ESTs located in the 1-Mb region. Four of the 11 ESTs mapped to the 360-kb UFS critical region. Shotgun sequencing of the two BAC clones and BLASTN search of the E ST databases revealed 3 other ESTs contained in the UFS critical region. These results will facilitate the cloning and identification of the UFS gene.
UR - http://www.scopus.com/inward/record.url?scp=0344995248&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=0344995248&partnerID=8YFLogxK
U2 - 10.1006/geno.1999.5908
DO - 10.1006/geno.1999.5908
M3 - Article
C2 - 10458906
AN - SCOPUS:0344995248
VL - 60
SP - 12
EP - 19
JO - Genomics
JF - Genomics
SN - 0888-7543
IS - 1
ER -