Isolation of high-molecular-weight plant DNA for DNA damage quantitation: relative effects of solar 297 nm UVB and 365 nm radiation

F. E. Quaite, John C. Sutherland, B. M. Sutherland

Research output: Contribution to journalArticle

29 Citations (Scopus)

Abstract

Quantitation of UV-induced DNA damages in nanogram quantities of non-radiactive DNA from irradiated plants by gel electrophoresis requires a prompt, efficient, high-yield method of isolating DNA yielding high-molecular-weight, enzymatically digestible DNA. To meet these criteria we devised a high-yield method for isolating from plant tissue, DNA whose single-strand molecular length is greater than about 170 kb. Leaf tissue is embedded in agarose plugs, digested with Proteinase K in the presence of detergent, and treated with phenylmethylsulfonyl fluoride (PMSF). The agarose plugs are then soaked with buffer appropriate to the desired enzyme treatment. Evaluation of the DNA on neutral and alkaline gels indicates its high molecular length and low frequency of single-strand breaks. The DNA can be digested with damage-specific and other endonucleases. The method is especially suitable for DNA damage quantitation, as tissue processing is carried out immediately after harvesting (allowing DNA lesion measurement at precisely known times after irradiation), and many samples can be easily handled at once. It should also be useful for molecular analysis of large numbers of plant samples available only in small quantities. We here use this method to quantitate DNA damage induced by 297 and 365 nm radiation, and calculate the relative damaging effects of these wavebands in today's solar spectrum.

Original languageEnglish (US)
Pages (from-to)475-483
Number of pages9
JournalPlant Molecular Biology
Volume24
Issue number3
DOIs
StatePublished - Feb 1 1994
Externally publishedYes

Fingerprint

Plant DNA
DNA damage
DNA Damage
Molecular Weight
Radiation
molecular weight
DNA
Sepharose
Gels
Phenylmethylsulfonyl Fluoride
agarose
Endopeptidase K
Endonucleases
Detergents
lesions (plant)
Electrophoresis
Buffers
enzymatic treatment
fluorides
methodology

Keywords

  • DNA
  • DNA damage measurement
  • gel electrophoresis
  • high-molecular-weight
  • isolation

ASJC Scopus subject areas

  • Agronomy and Crop Science
  • Genetics
  • Plant Science

Cite this

Isolation of high-molecular-weight plant DNA for DNA damage quantitation : relative effects of solar 297 nm UVB and 365 nm radiation. / Quaite, F. E.; Sutherland, John C.; Sutherland, B. M.

In: Plant Molecular Biology, Vol. 24, No. 3, 01.02.1994, p. 475-483.

Research output: Contribution to journalArticle

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