Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice

Karen H.S. Wilson, Sarah E. Eckenrode, Quan Zhen Li, Qing Guo Ruan, Ping Yang, Jing Da Shi, Abdoreza Davoodi-Semiromi, Richard A McIndoe, Byron P. Croker, Jin-Xiong She

Research output: Contribution to journalArticle

52 Citations (Scopus)

Abstract

We profiled the expression of 5,760 clones from a kidney subtraction library in the kidneys of three groups of NOD mice: nondiabetic, new-onset, and long-term diabetic. A total of 27 genes had lower expression and 1 gene (Gpx3) had higher expression in the new-onset diabetic mice compared with nondiabetic control NOD mice (P < 0.001). Similarly, 19 of the above 27 genes and 7 additional genes had higher expression and the Gpx3 gene had lower expression in long-term diabetic mice compared with controls (P < 0.001). Interestingly, only three genes may be different between new-onset and long-term diabetic mice (P < 0.0004). These genes are from diverse functional groups, including oxidative phosphorylation, free radical neutralization, channels, pumps, lipid processing, transcription and translation machinery, protein trafficking, constitutive protein processing, and immune function. The majority of these genes fall into four signaling pathways: insulin, transforming growth factor-β, tumor necrosis factor-α, and peroxisome proliferator-activated receptor. The most significant expression change was found for the stearoyl-coenzyme A desaturase 1 (SCD1) gene (P < 10-7). The lower expression levels of the SCD1 gene in both diabetic groups compared with controls were further confirmed by Northern blot analysis and immunohistochemistry.

Original languageEnglish (US)
Pages (from-to)2151-2159
Number of pages9
JournalDiabetes
Volume52
Issue number8
DOIs
StatePublished - Aug 1 2003

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Inbred NOD Mouse
Microarray Analysis
Kidney
Gene Expression
Genes
Peroxisome Proliferator-Activated Receptors
Oxidative Phosphorylation
Transforming Growth Factors
Protein Transport
Northern Blotting
Libraries
Free Radicals
Clone Cells
Tumor Necrosis Factor-alpha
Immunohistochemistry
Insulin
Lipids

ASJC Scopus subject areas

  • Internal Medicine
  • Endocrinology, Diabetes and Metabolism

Cite this

Wilson, K. H. S., Eckenrode, S. E., Li, Q. Z., Ruan, Q. G., Yang, P., Shi, J. D., ... She, J-X. (2003). Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice. Diabetes, 52(8), 2151-2159. https://doi.org/10.2337/diabetes.52.8.2151

Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice. / Wilson, Karen H.S.; Eckenrode, Sarah E.; Li, Quan Zhen; Ruan, Qing Guo; Yang, Ping; Shi, Jing Da; Davoodi-Semiromi, Abdoreza; McIndoe, Richard A; Croker, Byron P.; She, Jin-Xiong.

In: Diabetes, Vol. 52, No. 8, 01.08.2003, p. 2151-2159.

Research output: Contribution to journalArticle

Wilson, KHS, Eckenrode, SE, Li, QZ, Ruan, QG, Yang, P, Shi, JD, Davoodi-Semiromi, A, McIndoe, RA, Croker, BP & She, J-X 2003, 'Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice', Diabetes, vol. 52, no. 8, pp. 2151-2159. https://doi.org/10.2337/diabetes.52.8.2151
Wilson KHS, Eckenrode SE, Li QZ, Ruan QG, Yang P, Shi JD et al. Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice. Diabetes. 2003 Aug 1;52(8):2151-2159. https://doi.org/10.2337/diabetes.52.8.2151
Wilson, Karen H.S. ; Eckenrode, Sarah E. ; Li, Quan Zhen ; Ruan, Qing Guo ; Yang, Ping ; Shi, Jing Da ; Davoodi-Semiromi, Abdoreza ; McIndoe, Richard A ; Croker, Byron P. ; She, Jin-Xiong. / Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice. In: Diabetes. 2003 ; Vol. 52, No. 8. pp. 2151-2159.
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