Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication

Nayun Kim, Amy L. Abdulovic-Cui, Regan Gealy, Malcolm J. Lippert, Sue Jinks-Robertson

Research output: Contribution to journalArticle

72 Citations (Scopus)

Abstract

A high level of transcription has been associated with elevated spontaneous mutation and recombination rates in eukaryotic organisms. To determine whether the transcription level is directly correlated with the degree of genomic instability, we have developed a tetracycline-regulated LYS2 reporter system to modulate the transcription level over a broad range in Saccharomyces cerevisiae. We find that spontaneous mutation rate is directly proportional to the transcription level, suggesting that movement of RNA polymerase through the target initiates a mutagenic process(es). Using this system, we also investigated two hypotheses that have been proposed to explain transcription-associated mutagenesis (TAM): (1) transcription impairs replication fork progression in a directional manner and (2) DNA lesions accumulate under high-transcription conditions. The effect of replication fork progression was probed by comparing the mutational rates and spectra in yeast strains with the reporter gene placed in two different orientations near a well-characterized replication origin. The effect of endogenous DNA damage accumulation was investigated by studying TAM in strains defective in nucleotide excision repair or in lesion bypass by the translesion polymerase Polζ. Our results suggest that both replication orientation and endogenous lesion accumulation play significant roles in TAM, particularly in terms of mutation spectra.

Original languageEnglish (US)
Pages (from-to)1285-1296
Number of pages12
JournalDNA Repair
Volume6
Issue number9
DOIs
StatePublished - Sep 1 2007
Externally publishedYes

Fingerprint

Mutagenesis
Transcription
DNA Replication
Gene expression
Yeast
Yeasts
Mutation Rate
Gene Expression
DNA
Replication Origin
Genomic Instability
DNA-Directed RNA Polymerases
Tetracycline
Reporter Genes
DNA Repair
Genetic Recombination
DNA Damage
Saccharomyces cerevisiae
Mutation
Direction compound

Keywords

  • Mutation spectrum
  • Polymerase zeta
  • Replication direction
  • Spontaneous mutagenesis
  • Transcription

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Cell Biology

Cite this

Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication. / Kim, Nayun; Abdulovic-Cui, Amy L.; Gealy, Regan; Lippert, Malcolm J.; Jinks-Robertson, Sue.

In: DNA Repair, Vol. 6, No. 9, 01.09.2007, p. 1285-1296.

Research output: Contribution to journalArticle

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