SalivaSTAT: Direct-PCR and Pooling of Saliva Samples Collected in Healthcare and Community Setting for SARS-CoV-2 Mass Surveillance: Direct-pcr and pooling of saliva samples collected in healthcare and community setting for sars-cov-2 mass surveillance

Nikhil S Sahajpal, Ashis K Mondal, Sudha Ananth, Allan Njau, Pankaj Ahluwalia, Gary Newnam, Adriana Lozoya-Colinas, Nicholas V Hud, Vamsi Kota, Ted M Ross, Michelle D Reid, Sadanand Fulzele, Alka Chaubey, Madhuri Hegde, Amyn M Rojiani, Ravindra Kolhe

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

OBJECTIVES: Limitations of widespread current COVID-19 diagnostic testing exist in both the pre-analytical and analytical stages. To alleviate these limitations, we developed a universal saliva processing protocol (SalivaSTAT) that would enable an extraction-free RT-PCR test using commercially available RT-PCR kits.

METHODS: We optimized saliva collection devices, heat-shock treatment, and homogenization. Saliva samples (879) previously tested using the FDA-EUA method were reevaluated with the optimized SalivaSTAT protocol using two widely available commercial RT-PCR kits. A five-sample pooling strategy was evaluated as per FDA guidelines.

RESULTS: Saliva collection (done without any media) showed performance comparable to that of the FDA-EUA method. The SalivaSTAT protocol was optimized by incubating saliva samples at 95 °C for 30-min and homogenization, followed by RT-PCR assay. The clinical sample evaluation of 630 saliva samples using the SalivaSTAT protocol with PerkinElmer (600-samples) and CDC (30-samples) RT-PCR assay achieved positive (PPA) and negative percent agreements (NPAs) of 95.0% and 100%, respectively. The LoD was established as ~60-180 copies/mL by absolute quantification. Furthermore, a five-sample-pooling evaluation using 250 saliva samples achieved a PPA and NPA of 92% and 100%, respectively.

CONCLUSION: We have optimized an extraction-free RT-PCR assay for saliva samples that demonstrates comparable performance to FDA-EUA assay (Extraction and RT-PCR).

Original languageEnglish (US)
Article number904
JournalDiagnostics
Volume11
Issue number5
DOIs
StatePublished - May 2021

Keywords

  • Extraction-free
  • Pooling
  • RT-PCR
  • Saliva

ASJC Scopus subject areas

  • Clinical Biochemistry

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