Biochemistry and Molecular Biology

Research Output

Article

Expression of the iron-regulatory protein haemojuvelin in retina and its regulation during cytomegalovirus infection

Gnana-Prakasam, J. P., Zhang, M., Martin, P. M., Atherton, S. S., Smith, S. B. & Ganapathy, V., May 1 2009, In : Biochemical Journal. 419, 3, p. 533-543 11 p.

Research output: Contribution to journalArticle

19 Scopus citations

Expression of the sodium-coupled monocarboxylate transporters SMCT1 (SLC5A8) and SMCT2 (SLC5A12) in retina

Martin, P. M., Dun, Y., Mysona, B., Ananth, S., Roon, P., Smith, S. B. & Ganapathy, V., Jul 2007, In : Investigative Ophthalmology and Visual Science. 48, 7, p. 3356-3363 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Expression pattern of sigma receptor 1 mRNA and protein in mammalian retina

Shamsul Ola, M., Martin, P. M., El-Sherbeny, A., Roon, P., Agarwal, N., Sarthy, V. P., Casellas, P., Ganapathy, V. & Smith, S. B., Nov 1 2001, In : Molecular Brain Research. 95, 1-2, p. 86-95 10 p.

Research output: Contribution to journalArticle

65 Scopus citations

Expression profiles and function of IL6 in polymorphonuclear myeloid-derived suppressor cells

Ibrahim, M. L., Lu, C., Klement, J. D., Redd, P. S., Yang, D., Smith, A. D. & Liu, K., Jan 1 2020, (Accepted/In press) In : Cancer Immunology, Immunotherapy.

Research output: Contribution to journalArticle

Extracellular signal-regulated kinase signaling pathway regulates breast cancer cell migration by maintaining slug expression

Chen, H., Zhu, G., Li, Y., Padia, R. N., Dong, Z., Pan, Z. K., Liu, K. & Huang, S., Dec 15 2009, In : Cancer Research. 69, 24, p. 9228-9235 8 p.

Research output: Contribution to journalArticle

131 Scopus citations

Feeding daidzein to late pregnant sows influences the estrogen receptor beta and type 1 insulin-like growth factor receptor mRNA expression in newborn piglets

Ren, M. Q., Kuhn, G., Wegner, J., Nürnberg, G., Chen, J. & Ender, K., Aug 6 2001, In : Journal of Endocrinology. 170, 1, p. 129-135 7 p.

Research output: Contribution to journalArticle

54 Scopus citations

FGF19/FGFR4 signaling contributes to the resistance of hepatocellular carcinoma to sorafenib

Gao, L., Wang, X., Tang, Y., Huang, S., Hu, C. A. A. & Teng, Y., Jan 9 2017, In : Journal of Experimental and Clinical Cancer Research. 36, 1, 8.

Research output: Contribution to journalArticle

61 Scopus citations

FGFR1 fusion kinase regulation of MYC expression drives development of stem cell leukemia/lymphoma syndrome

Hu, T., Wu, Q., Chong, Y., Qin, H., Poole, C. J., van Riggelen, J., Ren, M. & Cowell, J. K., Nov 1 2018, In : Leukemia. 32, 11, p. 2363-2373 11 p.

Research output: Contribution to journalArticle

7 Scopus citations
7 Scopus citations

First draft genome for the sand-hopper Trinorchestia longiramus

Patra, A. K., Chung, O., Yoo, J. Y., Kim, M. S., Yoon, M. G., Choi, J. H. & Yang, Y., Dec 1 2020, In : Scientific Data. 7, 1, 85.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

First quantitative high-throughput screen in zebrafish identifies novel pathways for increasing pancreatic β-cell mass

Wang, G., Rajpurohit, S. K., Delaspre, F., Walker, S. L., White, D. T., Ceasrine, A., Kuruvilla, R., Li, R-J., Shim, J. S., Liu, J. O., Parsons, M. J. & Mumm, J. S., 2015, In : eLife. 4

Research output: Contribution to journalArticle

50 Scopus citations

FKBP12.6 protects heart from AngII-induced hypertrophy through inhibiting Ca2+/calmodulin-mediated signalling pathways in vivo and in vitro

Xiao, Y. F., Zeng, Z. X., Guan, X. H., Wang, L. F., Wang, C. J., Shi, H., Shou, W., Deng, K. Y. & Xin, H. B., Jul 2018, In : Journal of Cellular and Molecular Medicine. 22, 7, p. 3638-3651 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Fluorescent magnetic iron oxide nanoparticles for cardiac precursor cell selection from stromal vascular fraction and optimization for magnetic resonance imaging

Verma, V. K., Kamaraju, S. R., Kancherla, R., Kona, L. K., Beev, S. S., Debnath, T., Usha, S. P., Vadapalli, R., Arbab, A. S. & Chelluri, L. K., Jan 20 2015, In : International Journal of Nanomedicine. 10, p. 711-726 16 p.

Research output: Contribution to journalArticle

17 Scopus citations

Forkhead containing transcription factor Albino controls tetrapyrrole-based body pigmentation in planarian

Wang, C., Han, X. S., Li, F. F., Huang, S., Qin, Y. W., Zhao, X. X. & Jing, Q., Aug 2 2016, In : Cell Discovery. 2, 16029.

Research output: Contribution to journalArticle

14 Scopus citations

Fortnightly Review: The pneumococcal problem

Obaro, S. K., Monteil, M. A. & Henderson, D. C., Jun 15 1996, In : BMJ. 312, 7045, p. 1521-1525 5 p.

Research output: Contribution to journalArticle

86 Scopus citations

Foxf1 haploinsufficiency reduces Notch-2 signaling during mouse lung development

Kalinichenko, V. V., Gusarova, G. A., Kim, I., Shin, B., Yoder, H. M., Clark, J., Sapozhnikov, A. M., Whitsett, J. A. & Costa, R. H., Mar 2004, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 286, 3 30-3, p. L521-L530

Research output: Contribution to journalArticle

53 Scopus citations

Foxp3-deficient regulatory T cells do not revert into conventional effector CD4+ T cells but constitute a unique cell subset

Kuczma, M., Podolsky, R., Garge, N., Daniely, D., Pacholczyk, R., Ignatowicz, L. & Kraj, P., Sep 15 2009, In : Journal of Immunology. 183, 6, p. 3731-3741 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

Fruit and vegetable intake and urinary levels of prostaglandin E2 metabolite in postmenopausal women

Kim, S., Rimando, J. & Sandler, D. P., May 19 2015, In : Nutrition and Cancer. 67, 4, p. 580-586 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Functional Analysis of Type 1α cGMP-dependent Protein Kinase Using Green Fluorescent Fusion Proteins

Browning, D. D., Mc Shane, M., Marty, C. & Ye, R. D., Apr 20 2001, In : Journal of Biological Chemistry. 276, 16, p. 13039-13048 10 p.

Research output: Contribution to journalArticle

42 Scopus citations

Functional characteristics and tissue distribution pattern of organic cation transporter 2 (OCTN2), an organic cation/carnitine transporter

Wu, X., Huang, W., Prasad, P. D., Seth, P., Rajan, D. P., Leibach, F. H., Chen, J., Conway, S. J. & Ganapathy, V., Sep 1999, In : Journal of Pharmacology and Experimental Therapeutics. 290, 3, p. 1482-1492 11 p.

Research output: Contribution to journalArticle

293 Scopus citations

Functional Characteristics of NaS2, a Placenta-specific Na+-coupled Transporter for Sulfate and Oxyanions of the Micronutrients Selenium and Chromium

Miyauchi, S., Srinivas, S. R., Fei, Y. J., Gopal, E., Umapathy, N. S., Wang, H., Conway, S. J., Ganapathy, V. & Prasad, P. D., Jun 1 2006, In : Placenta. 27, 6-7, p. 550-559 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

Functional characterization, localization, and molecular identification of rabbit intestinal N-amino acid transporter

Talukder, J. R., Kekuda, R., Saha, P., Prasad, P. D., Ganapathy, V. & Sundaram, U., Jun 1 2008, In : American Journal of Physiology - Gastrointestinal and Liver Physiology. 294, 6, p. G1301-G1310

Research output: Contribution to journalArticle

15 Scopus citations

Functional coupling between a bafilomycin A1-sensitive proton pump and a probenecid-sensitive folate transporter in human placental choriocarcinoma cells

Prasad, P. D., Mahesh, V. B., Leibach, F. H. & Ganapathy, V., Jun 30 1994, In : BBA - Molecular Cell Research. 1222, 2, p. 309-314 6 p.

Research output: Contribution to journalArticle

39 Scopus citations

Functional dissection of HOXD cluster genes in regulation of neuroblastoma cell proliferation and differentiation

Zha, Y., Ding, E., Yang, L., Mao, L., Wang, X., McCarthy, B. A., Huang, S. & Ding, H., Aug 7 2012, In : PloS one. 7, 8, e40728.

Research output: Contribution to journalArticle

23 Scopus citations

Functional expression of the plasma membrane serotonin transporter but not the vesicular monoamine transporter in human placental trophoblasts and choriocarcinoma cells

Prasad, P. D., Hoffmans, B. J., Moe, A. J., Smith, C. H., Leibach, F. H. & Ganapathy, V., May 1996, In : Placenta. 17, 4, p. 201-207 7 p.

Research output: Contribution to journalArticle

44 Scopus citations

Functional Identification of a Novel Transport System for Endogenous and Synthetic Opioid Peptides in the Rabbit Conjunctival Epithelial Cell Line CJVE

Ananth, S., Karunakaran, S., Martin, P. M., Nagineni, C. N., Hooks, J. J., Smith, S. B., Prasad, P. D. & Ganapathy, V., May 2009, In : Pharmaceutical Research. 26, 5, p. 1226-1235 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Functional link between tyrosine phosphorylation and human serotonin transporter gene expression

Prasad, P. D., Torres-Zamorano, V., Kekuda, R., Leibach, F. H. & Ganapathy, V., Apr 23 1997, In : European Journal of Pharmacology. 325, 1, p. 85-92 8 p.

Research output: Contribution to journalArticle

16 Scopus citations

Functional role and tobacco smoking effects on methylation of CYP1A1 gene in prostate cancer

Mitsui, Y., Chang, I., Kato, T., Hashimoto, Y., Yamamura, S., Fukuhara, S., Wong, D. K., Shiina, M., Imai-Sumida, M., Majid, S., Saini, S., Shiina, H., Nakajima, K., Deng, G., Dahiya, R. & Tanaka, Y., 2016, In : Oncotarget. 7, 31, p. 49107-49121 15 p.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Functional role of DNA mismatch repair gene PMS2 in prostate cancer cells

Fukuhara, S., Chang, I., Mitsui, Y., Chiyomaru, T., Yamamura, S., Majid, S., Saini, S., Deng, G., Gill, A., Wong, D. K., Shiina, H., Nonomura, N., Lau, Y. F. C., Dahiya, R. & Tanaka, Y., 2015, In : Oncotarget. 6, 18, p. 16341-16351 11 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Functional significance of protein kinase A activation by endothelin-1 and ATP: Negative regulation of SRF-dependent gene expression by PKA

Davis, A., Hogarth, K., Fernandes, D., Solway, J., Niu, J., Kolenko, V., Browning, D., Miano, J. M., Orlov, S. N. & Dulin, N. O., Jun 1 2003, In : Cellular Signalling. 15, 6, p. 597-604 8 p.

Research output: Contribution to journalArticle

38 Scopus citations

Function and Evolution of DNA Methylation in Nasonia vitripennis

Wang, X., Wheeler, D., Avery, A., Rago, A., Choi, J-H., Colbourne, J. K., Clark, A. G. & Werren, J. H., Oct 2013, In : PLoS Genetics. 9, 10, e1003872.

Research output: Contribution to journalArticle

104 Scopus citations

GCN2-dependent metabolic stress is essential for endotoxemic cytokine induction and pathology

Liu, H., Huang, L., Bradley, J., Liu, K., Bardhan, K., Ron, D., Mellor, A. L., Munn, D. H. & McGaha, T. L., Feb 2014, In : Molecular and Cellular Biology. 34, 3, p. 428-438 11 p.

Research output: Contribution to journalArticle

36 Scopus citations

Gene amplification and associated loss of 5′ regulatory sequences of CoAA in human cancers

Sui, Y., Yang, Z., Xiong, S., Zhang, L., Blanchard, K. L., Peiper, S. C., Dynan, W. S., Tuan, D. & Ko, L., Feb 8 2007, In : Oncogene. 26, 6, p. 822-835 14 p.

Research output: Contribution to journalArticle

21 Scopus citations

Geneclusterviz: A tool for conserved gene cluster visualization, exploration and analysis

Pejaver, V. R., An, J., Rhee, S. M., Bhan, A., Choi, J. H., Liu, B., Lee, H., Brown, P. J., Kysela, D., Brun, Y. V. & Kim, S., Jun 2012, In : Bioinformatics. 28, 11, p. 1527-1529 3 p., bts177.

Research output: Contribution to journalArticle

5 Scopus citations

Gene discovery in the horned beetle Onthophagus taurus

Choi, J. H., Kijimoto, T., Snell-Rood, E., Tae, H., Yang, Y., Moczek, A. P. & Andrews, J., Dec 14 2010, In : BMC Genomics. 11, 1, 703.

Research output: Contribution to journalArticle

31 Scopus citations

Generation and characterization of polyclonal antibodies specific for human p110 sEGFR

Christensen, T. A., Reiter, J. L., Baron, A. T. & Maihle, N. J., Jan 1 2002, In : Hybridoma and Hybridomics. 21, 3, p. 183-189 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Generation of skeletal, smooth and low molecular weight non-muscle tropomyosin isoforms from the chicken tropomyosin 1 gene

Forry-Schaudies, S., Maihle, N. J. & Hughes, S. H., Jan 20 1990, In : Journal of Molecular Biology. 211, 2, p. 321-330 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Generation of T cell hybridomas from naturally occurring FoxP3+ regulatory T cells.

Singh, N., Pacholczyk, R. W., Iwashima, M. & Ignatowicz, L., May 11 2011, In : Methods in molecular biology (Clifton, N.J.). 707, p. 39-44 6 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genetically obese MMTV-TGF-α/Lepob Lepob female mice do not develop mammary tumors

Cleary, M. P., Phillips, F. C., Getzin, S. C., Jacobson, T. L., Jacobson, M. K., Christensen, T. A., Juneja, S. C., Grande, J. P. & Maihle, N. J., Feb 1 2003, In : Breast Cancer Research and Treatment. 77, 3, p. 205-215 11 p.

Research output: Contribution to journalArticle

130 Scopus citations

Genetic analysis of agrobacterium tumefaciens unipolar polysaccharide production reveals complex integrated control of the motile-to-sessile switch

Xu, J., Kim, J., Koestler, B. J., Choi, J-H., Waters, C. M. & Fuqua, C., Sep 2013, In : Molecular Microbiology. 89, 5, p. 929-948 20 p.

Research output: Contribution to journalArticle

59 Scopus citations
34 Scopus citations

Genistein suppresses prostate cancer growth through inhibition of oncogenic MicroRNA-151

Chiyomaru, T., Yamamura, S., Zaman, M. S., Majid, S., Deng, G., Shahryari, V., Saini, S., Hirata, H., Ueno, K., Chang, I., Tanaka, Y., Tabatabai, Z. L., Enokida, H., Nakagawa, M. & Dahiya, R., Aug 23 2012, In : PloS one. 7, 8, e43812.

Research output: Contribution to journalArticle

Open Access
78 Scopus citations

Genome-wide analysis of HOXC9-induced neuronal differentiation of neuroblastoma cells

Wang, X., Yang, L., Choi, J. H., Kitamura, E., Chang, C. S., Ding, J., Lee, E. J., Cui, H. & Ding, H. F., 2014, In : Genomics Data. 2, p. 50-52 3 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genome wide DNA differential methylation regions in colorectal cancer patients in relation to blood related family members, obese and non-obese controls - A preliminary report

Shiao, S. P. K., Xiao, H., Dong, L., Wang, X., Liu, K., She, J. & Shi, H., May 22 2018, In : Oncotarget. 9, 39, p. 25557-25571 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia

Pei, L., Choi, J-H., Liu, J., Lee, E. J., McCarthy, B., Wilson, J. M., Speir, E., Awan, F., Tae, H., Arthur, G., Schnabel, J. L., Taylor, K. H., Wang, X., Xu, D., Ding, H., Munn, D. H., Caldwell, C. W. & Shi, H., Jun 2012, In : Epigenetics. 7, 6, p. 567-578 12 p.

Research output: Contribution to journalArticle

64 Scopus citations

Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing

Choi, J-H., Li, Y., Guo, J., Pei, L., Rauch, T. A., Kramer, R. S., Macmil, S. L., Wiley, G. B., Bennett, L. B., Schnabel, J. L., Taylor, K. H., Kim, S., Xu, D., Sreekumar, A., Pfeifer, G. P., Roe, B. A., Caldwell, C. W., Bhalla, K. N. & Shi, H., 2010, In : PloS one. 5, 9, e13020.

Research output: Contribution to journalArticle

33 Scopus citations

Genomic analysis of the ecdysone steroid signal at metamorphosis onset using ecdysoneless and EcRnull Drosophila melanogaster mutants

Davis, M. B. & Li, T., 2013, In : Genes and Genomics. 35, 1, p. 21-46 26 p.

Research output: Contribution to journalArticle

8 Scopus citations

Genotypic analysis of the protease and reverse transcriptase of HIV type 1 subtype C isolates from antiretroviral drug-naive adults in Malawi

Petch, L. A., Hoffman, I. F., Jere, C. S., Kazembe, P. N., Martinson, F. E., Chilongozi, D., Fiscus, S. A. & Cohen, M. S., Sep 2005, In : AIDS Research and Human Retroviruses. 21, 9, p. 799-805 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

Genotypic and functional roles of IL-1B and IL-1RN on the risk of gastroesophageal reflux disease: the presence of IL-1B-511*T/IL-1RN*1 (T1) haplotype may protect against the disease

Chourasia, D., Achyut, B. R., Tripathi, S., Mittal, B., Mittal, R. D. & Ghoshal, U. C., Nov 2009, In : American Journal of Gastroenterology. 104, 11, p. 2704-13 10 p.

Research output: Contribution to journalArticle

34 Scopus citations

Giant Magnetic Heat Induction of Magnesium-Doped γ-Fe2O3 Superparamagnetic Nanoparticles for Completely Killing Tumors

Jang, J. T., Lee, J., Seon, J., Ju, E., Kim, M., Kim, Y. I., Kim, M. G., Takemura, Y., Arbab, A. S., Kang, K. W., Park, K. H., Paek, S. H. & Bae, S., Feb 8 2018, In : Advanced Materials. 30, 6, 1704362.

Research output: Contribution to journalArticle

28 Scopus citations